SMTL ID : 7r33.1 (1 other biounit)

Difference-refined structure of fatty acid photodecarboxylase 20 ps following 400-nm laser irradiation of the dark-state determined by SFX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 40 residues within 4Å: Chain A: G.14, G.16, T.17, A.18, L.37, E.38, A.39, F.58, W.64, A.82, R.83, G.84, R.85, L.86, G.89, S.90, S.91, T.93, N.94, A.95, T.96, L.97, A.220, A.221, V.222, C.264, A.265, G.266, H.269, L.273, N.499, A.500, D.533, A.534, Q.544, T.545, G.546, A.547, V.549 Ligands: STE.2 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:F.58, A:A.82, A:N.94, A:N.499 Hydrogen bonds: A:T.17, A:T.17, A:A.18, A:A.39, A:G.84, A:S.90, A:N.94, A:A.95, A:L.97, A:L.97, A:V.222, A:V.222, A:A.500, A:A.534, A:T.545, A:G.546, A:A.547 Water bridges: A:G.16, A:A.19, A:R.83, A:R.83, A:R.83, A:G.84, A:S.90, A:A.267, A:R.375

2 x STE: STEARIC ACID(Non-covalent)

STE.2: 19 residues within 4Å: Chain A: F.58, A.95, S.353, T.354, G.355, R.375, V.377, G.379, M.380, A.381, G.386, T.389, Y.390, F.393, T.408, Q.410, S.498, N.499 Ligands: FAD.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.377, A:A.381, A:T.389, A:Y.390, A:Y.390, A:F.393, A:T.408 Hydrogen bonds: A:N.499 Water bridges: A:R.375, A:R.375, A:R.375 Salt bridges: A:R.375 STE.3: 7 residues within 4Å: Chain A: R.46, I.50, A.52, A.53, T.55, R.56, I.335 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hadjidemetriou, K. et al., Time-resolved serial femtosecond crystallography on fatty-acid photodecarboxylase: lessons learned. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-09-14

Peptides

Fatty acid photodecarboxylase, chloroplastic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty acid photodecarboxylase, chloroplastic

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