SMTL ID : 7r36.2 (1 other biounit)

Difference-refined structure of fatty acid photodecarboxylase 2 microsecond following 400-nm laser irradiation of the dark-state determined by SFX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 39 residues within 4Å: Chain A: G.14, G.15, G.16, T.17, A.18, E.38, A.39, F.58, W.64, A.82, R.83, G.84, R.85, L.86, G.89, S.90, S.91, T.93, N.94, A.95, T.96, L.97, M.191, A.220, A.221, V.222, C.264, A.265, G.266, H.269, L.273, N.499, D.533, A.534, Q.544, T.545, G.546, A.547, V.549 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:F.58, A:A.82, A:N.499 Hydrogen bonds: A:G.15, A:T.17, A:T.17, A:A.18, A:A.39, A:G.84, A:L.86, A:S.90, A:S.90, A:N.94, A:A.95, A:L.97, A:L.97, A:V.222, A:V.222, A:A.534, A:T.545, A:T.545, A:T.545, A:G.546, A:A.547 Water bridges: A:G.16, A:A.19, A:R.83, A:R.83, A:R.83, A:A.267, A:A.267, A:R.375

2 x STE: STEARIC ACID(Non-covalent)

STE.2: 19 residues within 4Å: Chain A: T.55, L.310, I.324, I.328, S.353, T.354, G.355, V.377, G.379, M.380, A.381, G.386, V.387, T.389, Y.390, F.393, W.403, T.408, Q.410 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.55, A:L.310, A:I.324, A:I.328, A:V.377, A:V.387, A:Y.390, A:Y.390, A:Y.390, A:Y.390, A:F.393, A:F.393, A:W.403 STE.3: 5 residues within 4Å: Chain A: I.50, A.53, R.56, I.335, L.351 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.50, A:A.53, A:L.351

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hadjidemetriou, K. et al., Time-resolved serial femtosecond crystallography on fatty-acid photodecarboxylase: lessons learned. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-09-14

Peptides

Fatty acid photodecarboxylase, chloroplastic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Fatty acid photodecarboxylase, chloroplastic

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