SMTL ID : 7r9x.1 (1 other biounit)

Crystal structure of a dehydrating condensation domain, AmbE-CmodAA, involved in nonribosomal peptide synthesis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: S.25, P.31 Ligand excluded by PLIP IOD.2: 4 residues within 4Å: Chain A: P.13, V.190, A.191, R.194 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: E.323, L.327 Ligand excluded by PLIP

6 x NA: SODIUM ION(Non-functional Binders)

NA.4: 7 residues within 4Å: Chain A: D.152, G.153, W.154, L.299, N.351, V.353, F.355 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.153, A:N.351 Water bridges: A:W.154 NA.5: 3 residues within 4Å: Chain A: R.109, V.374, V.375 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.109, A:V.375 Water bridges: A:Q.116 NA.6: 5 residues within 4Å: Chain A: V.234, D.235, A.413, G.414, R.417 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.235, A:A.413 NA.7: 4 residues within 4Å: Chain A: V.38, H.40, L.156, I.370 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.40 NA.8: 6 residues within 4Å: Chain A: A.238, D.239, S.240, L.241, R.392, L.393 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.238, A:S.240, A:L.241, A:L.393 NA.9: 3 residues within 4Å: Chain A: R.269, F.270, A.415 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.418

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patteson, J.B. et al., Structure and Function of a Dehydrating Condensation Domain in Nonribosomal Peptide Biosynthesis. J.Am.Chem.Soc. (2022)

Release Date

2022-07-13

Peptides

AmbE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

AmbE

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