SMTL ID : 7r9x.2 (1 other biounit)

Crystal structure of a dehydrating condensation domain, AmbE-CmodAA, involved in nonribosomal peptide synthesis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: R.269, F.270, A.415 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: L.247, S.251, L.313 Ligand excluded by PLIP

6 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: G.29, P.31 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.25 NA.4: 4 residues within 4Å: Chain A: R.53, L.170, V.175, A.176 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.53, A:A.176 NA.5: 4 residues within 4Å: Chain A: P.13, V.190, A.191, R.194 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.191, A:R.194 NA.6: 5 residues within 4Å: Chain A: V.234, D.235, A.413, G.414, R.417 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.235, A:A.413 NA.7: 7 residues within 4Å: Chain A: V.236, P.237, A.238, S.240, L.241, R.392, L.393 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.238, A:S.240, A:L.241, A:L.393 NA.8: 4 residues within 4Å: Chain A: R.104, L.135, R.139, L.371 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.104, A:R.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patteson, J.B. et al., Structure and Function of a Dehydrating Condensation Domain in Nonribosomal Peptide Biosynthesis. J.Am.Chem.Soc. (2022)

Release Date

2022-07-13

Peptides

AmbE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

AmbE

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