SMTL ID : 7rao.1 (1 other biounit)

Structure of M66I mutant of disulfide stabilized HIV-1 CA hexamer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-hexamer

Ligands

18 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: R.162, M.215 Chain D: M.144 Ligand excluded by PLIP IOD.3: 4 residues within 4Å: Chain A: E.35, K.170, R.173 Chain D: G.61 Ligand excluded by PLIP IOD.8: 4 residues within 4Å: Chain B: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain B: R.162, M.215 Chain C: M.144 Ligand excluded by PLIP IOD.13: 3 residues within 4Å: Chain B: K.170, R.173 Chain C: G.61 Ligand excluded by PLIP IOD.14: 4 residues within 4Å: Chain C: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.15: 3 residues within 4Å: Chain C: R.162, M.215 Chain F: M.144 Ligand excluded by PLIP IOD.16: 4 residues within 4Å: Chain C: E.35, K.170, R.173 Chain F: G.61 Ligand excluded by PLIP IOD.21: 4 residues within 4Å: Chain D: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.22: 3 residues within 4Å: Chain D: R.162, M.215 Chain E: M.144 Ligand excluded by PLIP IOD.26: 3 residues within 4Å: Chain D: K.170, R.173 Chain E: G.61 Ligand excluded by PLIP IOD.27: 4 residues within 4Å: Chain E: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.28: 3 residues within 4Å: Chain B: M.144 Chain E: R.162, M.215 Ligand excluded by PLIP IOD.29: 4 residues within 4Å: Chain B: G.61 Chain E: E.35, K.170, R.173 Ligand excluded by PLIP IOD.34: 4 residues within 4Å: Chain F: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.35: 3 residues within 4Å: Chain A: M.144 Chain F: R.162, M.215 Ligand excluded by PLIP IOD.39: 3 residues within 4Å: Chain A: G.61 Chain F: K.170, R.173 Ligand excluded by PLIP

21 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: N.57 Chain F: P.38, R.173 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: I.37, P.38 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: P.17, R.18 Chain F: R.18 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: V.27, E.28, G.60, H.62 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: N.57 Chain E: P.38, R.173 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain B: I.37, P.38 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain B: P.17, R.18 Chain E: R.18 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain B: P.38, R.173 Chain C: N.57 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain C: I.37, P.38 Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain B: R.18 Chain C: P.17, R.18 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain C: V.27, E.28, G.60, H.62 Ligand excluded by PLIP CL.23: 3 residues within 4Å: Chain A: P.38, R.173 Chain D: N.57 Ligand excluded by PLIP CL.24: 2 residues within 4Å: Chain D: I.37, P.38 Ligand excluded by PLIP CL.25: 3 residues within 4Å: Chain A: R.18 Chain D: P.17, R.18 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain D: P.38, R.173 Chain E: N.57 Ligand excluded by PLIP CL.31: 2 residues within 4Å: Chain E: I.37, P.38 Ligand excluded by PLIP CL.32: 3 residues within 4Å: Chain D: R.18 Chain E: P.17, R.18 Ligand excluded by PLIP CL.33: 4 residues within 4Å: Chain E: V.27, E.28, G.60, H.62 Ligand excluded by PLIP CL.36: 3 residues within 4Å: Chain C: P.38, R.173 Chain F: N.57 Ligand excluded by PLIP CL.37: 2 residues within 4Å: Chain F: I.37, P.38 Ligand excluded by PLIP CL.38: 3 residues within 4Å: Chain C: R.18 Chain F: P.17, R.18 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bester, S.M. et al., Structural and mechanistic bases of viral resistance to long-acting HIV-1 capsid inhibitor, Lenacapavir. To Be Published

Release Date

2022-11-02

Peptides

Capsid protein p24: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Capsid protein p24

Related Entries With Identical Sequence