SMTL ID : 7rao.2 (1 other biounit)

Structure of M66I mutant of disulfide stabilized HIV-1 CA hexamer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-hexamer

Ligands

24 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain F: M.144 Ligand excluded by PLIP IOD.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.4: 4 residues within 4Å: Chain A: K.170, R.173 Chain F: G.61, Q.63 Ligand excluded by PLIP IOD.10: 4 residues within 4Å: Chain B: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.11: 1 residues within 4Å: Chain D: M.144 Ligand excluded by PLIP IOD.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.13: 4 residues within 4Å: Chain B: K.170, R.173 Chain D: G.61, Q.63 Ligand excluded by PLIP IOD.19: 4 residues within 4Å: Chain C: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.20: 1 residues within 4Å: Chain E: M.144 Ligand excluded by PLIP IOD.21: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.22: 4 residues within 4Å: Chain C: K.170, R.173 Chain E: G.61, Q.63 Ligand excluded by PLIP IOD.28: 4 residues within 4Å: Chain D: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.29: 1 residues within 4Å: Chain C: M.144 Ligand excluded by PLIP IOD.30: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.31: 4 residues within 4Å: Chain C: G.61, Q.63 Chain D: K.170, R.173 Ligand excluded by PLIP IOD.37: 4 residues within 4Å: Chain E: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.38: 1 residues within 4Å: Chain A: M.144 Ligand excluded by PLIP IOD.39: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.40: 4 residues within 4Å: Chain A: G.61, Q.63 Chain E: K.170, R.173 Ligand excluded by PLIP IOD.46: 4 residues within 4Å: Chain F: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.47: 1 residues within 4Å: Chain B: M.144 Ligand excluded by PLIP IOD.48: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.49: 4 residues within 4Å: Chain B: G.61, Q.63 Chain F: K.170, R.173 Ligand excluded by PLIP

30 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: N.57 Chain E: R.173 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: P.17, R.18 Chain E: R.18 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: I.37, P.38 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: A.31, Y.145 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: K.203, P.207 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain B: N.57 Chain F: R.173 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain B: P.17, R.18 Chain F: R.18 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain B: I.37, P.38 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain B: A.31, Y.145 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain B: K.203, P.207 Ligand excluded by PLIP CL.23: 2 residues within 4Å: Chain C: N.57 Chain D: R.173 Ligand excluded by PLIP CL.24: 3 residues within 4Å: Chain C: P.17, R.18 Chain D: R.18 Ligand excluded by PLIP CL.25: 2 residues within 4Å: Chain C: I.37, P.38 Ligand excluded by PLIP CL.26: 2 residues within 4Å: Chain C: A.31, Y.145 Ligand excluded by PLIP CL.27: 2 residues within 4Å: Chain C: K.203, P.207 Ligand excluded by PLIP CL.32: 2 residues within 4Å: Chain B: R.173 Chain D: N.57 Ligand excluded by PLIP CL.33: 3 residues within 4Å: Chain B: R.18 Chain D: P.17, R.18 Ligand excluded by PLIP CL.34: 2 residues within 4Å: Chain D: I.37, P.38 Ligand excluded by PLIP CL.35: 2 residues within 4Å: Chain D: A.31, Y.145 Ligand excluded by PLIP CL.36: 2 residues within 4Å: Chain D: K.203, P.207 Ligand excluded by PLIP CL.41: 2 residues within 4Å: Chain C: R.173 Chain E: N.57 Ligand excluded by PLIP CL.42: 3 residues within 4Å: Chain C: R.18 Chain E: P.17, R.18 Ligand excluded by PLIP CL.43: 2 residues within 4Å: Chain E: I.37, P.38 Ligand excluded by PLIP CL.44: 2 residues within 4Å: Chain E: A.31, Y.145 Ligand excluded by PLIP CL.45: 2 residues within 4Å: Chain E: K.203, P.207 Ligand excluded by PLIP CL.50: 2 residues within 4Å: Chain A: R.173 Chain F: N.57 Ligand excluded by PLIP CL.51: 3 residues within 4Å: Chain A: R.18 Chain F: P.17, R.18 Ligand excluded by PLIP CL.52: 2 residues within 4Å: Chain F: I.37, P.38 Ligand excluded by PLIP CL.53: 2 residues within 4Å: Chain F: A.31, Y.145 Ligand excluded by PLIP CL.54: 2 residues within 4Å: Chain F: K.203, P.207 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bester, S.M. et al., Structural and mechanistic bases of viral resistance to long-acting HIV-1 capsid inhibitor, Lenacapavir. To Be Published

Release Date

2022-11-02

Peptides

Capsid protein p24: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

C
C

D
C

E
C

F
C

Capsid protein p24

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