SMTL ID : 7rct.1 (1 other biounit)

Non-receptor Protein Tyrosine Phosphatase SHP2 in Complex with Allosteric Inhibitor RMC-4550

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 4Q4: {3-[(3S,4S)-4-amino-3-methyl-2-oxa-8-azaspiro[4.5]decan-8-yl]-6-(2,3-dichlorophenyl)-5-methylpyrazin-2-yl}methanol(Non-covalent)

4Q4.1: 17 residues within 4Å: Chain A: T.108, E.110, R.111, F.113, H.114, L.216, N.217, T.218, T.219, E.249, E.250, T.253, L.254, Q.257, P.491, K.492, Q.495 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:E.250, A:T.253, A:L.254, A:P.491, A:K.492 Hydrogen bonds: A:T.108, A:L.216, A:T.218, A:T.219, A:T.253 Water bridges: A:R.111 pi-Cation interactions: A:R.111 Halogen bonds: A:T.253

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: T.356, C.459, S.460, G.462, R.465, T.466 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: S.134, P.215, L.216, N.217 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vemulapalli, V. et al., Targeted Degradation of the Oncogenic Phosphatase SHP2. Biochemistry (2021)

Release Date

2021-09-01

Peptides

Tyrosine-protein phosphatase non-receptor type 11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tyrosine-protein phosphatase non-receptor type 11

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