- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- monomer
- Ligands
- 1 x SFG: SINEFUNGIN(Non-covalent)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 4 residues within 4Å:- Chain A: I.170, Y.179, L.197
- Ligands: SFG.1
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.179
EDO.3: 4 residues within 4Å:- Chain A: K.14, E.17, N.18, Y.32
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.17, A:N.18, A:N.18
EDO.4: 6 residues within 4Å:- Chain A: T.24, S.28, I.30, I.116, D.117, K.119
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.16, A:S.28, A:K.119
EDO.5: 6 residues within 4Å:- Chain A: K.154, K.155, W.156, K.204, I.208
- Ligands: EDO.9
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.154, A:W.156, A:K.204
- Water bridges: A:K.204
EDO.6: 5 residues within 4Å:- Chain A: K.186, Y.187, K.203, K.204, D.207
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.203, A:K.204, A:D.207
- Water bridges: A:K.203, A:K.203, A:K.204
EDO.7: 5 residues within 4Å:- Chain A: Y.86, K.89, W.97, T.98, V.99
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.89, A:K.89, A:V.99
- Water bridges: A:Y.86, A:T.98, A:D.100
EDO.8: 5 residues within 4Å:- Chain A: E.17, K.25, Y.31, K.255, I.257
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.17, A:K.25, A:K.255
EDO.9: 5 residues within 4Å:- Chain A: W.156, R.157, Y.158, K.159
- Ligands: EDO.5
No protein-ligand interaction detected (PLIP)EDO.10: 7 residues within 4Å:- Chain A: E.225, E.316, W.317, I.318, T.510, K.525
- Ligands: EDO.11
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.225, A:W.317, A:K.525
- Water bridges: A:R.233
EDO.11: 8 residues within 4Å:- Chain A: R.221, E.225, D.247, K.280, W.317, I.318, L.319
- Ligands: EDO.10
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.221, A:D.247, A:D.247, A:K.280, A:W.317, A:L.319
EDO.14: 5 residues within 4Å:- Chain A: S.345, F.346, F.446
- Chain B: C.3, A.4
No protein-ligand interaction detected (PLIP)- 2 x K: POTASSIUM ION(Non-covalent)
K.12: 5 residues within 4Å:- Chain A: G.250, A.251, N.252, V.259, S.260
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:G.250, A:A.251, A:V.259, H2O.7
K.13: 4 residues within 4Å:- Chain A: K.89, K.90, Y.92, E.94
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:K.89, A:K.90, A:Y.92, A:E.94, H2O.13
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhou, J. et al., Repurposing epigenetic inhibitors to target the Clostridioides difficile- specific DNA adenine methyltransferase and sporulation regulator CamA. Epigenetics (2022)
- Release Date
- 2021-09-15
- Peptides
- Site-specific DNA-methyltransferase (adenine-specific): A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- monomer
- Ligands
- 1 x SFG: SINEFUNGIN(Non-covalent)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhou, J. et al., Repurposing epigenetic inhibitors to target the Clostridioides difficile- specific DNA adenine methyltransferase and sporulation regulator CamA. Epigenetics (2022)
- Release Date
- 2021-09-15
- Peptides
- Site-specific DNA-methyltransferase (adenine-specific): A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B