SMTL ID : 8cxv.3 (2 other biounits)

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Compound 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

2 x K: POTASSIUM ION(Non-covalent)

K.1: 5 residues within 4Å: Chain A: G.250, A.251, N.252, V.259, S.260 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.250, A:A.251, A:V.259, H2O.3 K.2: 3 residues within 4Å: Chain A: L.366, V.369, D.371 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:L.366, A:V.369, A:D.371

1 x T9R: N-[(4-hydroxyphenyl)methyl]adenosine(Non-covalent)

T9R.3: 15 residues within 4Å: Chain A: G.29, Y.31, I.62, S.63, G.65, D.115, I.116, D.117, C.149, D.150, S.151, P.168, Y.179, F.201 Chain B: A.8 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.116 Hydrogen bonds: A:I.116, A:D.117, A:D.150, A:D.150, A:S.151 pi-Stacking: A:Y.179, A:F.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, J. et al., Systematic Design of Adenosine Analogs as Inhibitors of a Clostridioides difficile- Specific DNA Adenine Methyltransferase Required for Normal Sporulation and Persistence. J.Med.Chem. (2023)

Release Date

2023-01-11

Peptides

Site-specific DNA-methyltransferase (adenine-specific): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Site-specific DNA-methyltransferase (adenine-specific)

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