SMTL ID : 7rkf.1

Structure of CX3CL1-US28-G11iN18-scFv16 in TL-state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 15 residues within 4Å: Chain A: T.40, G.41, E.42, S.43, G.44, K.45, S.46, T.47, S.149, R.174, R.176, K.268, C.323, A.324, T.325 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:T.40, A:E.42, A:S.43, A:G.44, A:K.45, A:S.46, A:S.46, A:T.47, A:S.149, A:R.174, A:R.174, A:K.268, A:A.324, A:T.325, A:T.325 Salt bridges: A:K.45, A:R.176, A:R.176

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain E: N.9, Q.28, Q.29, Q.31 Chain F: T.34 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:N.9, E:Q.28, E:Q.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsutsumi, N. et al., Atypical structural snapshots of human cytomegalovirus GPCR interactions with host G proteins. Sci Adv (2022)

Release Date

2022-01-26

Peptides

Guanine nucleotide-binding protein subunit alpha-11: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Antibody fragment scFv16: D
Fractalkine: E
G-protein coupled receptor homolog US28: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
L

F
R

Membrane

We predict this structure to be a membrane protein.
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Guanine nucleotide-binding protein subunit alpha-11

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Antibody fragment scFv16

Fractalkine

G-protein coupled receptor homolog US28

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