SMTL ID : 7rky.1

Binding mode of US27-Gi-scFv16 in OCL-state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: A.40, G.41, E.42, S.43, G.44, K.45, S.46, T.47, D.149, S.150, R.175, K.269, D.271, L.272, C.324, A.325, T.326 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:E.42, A:S.43, A:G.44, A:K.45, A:S.46, A:T.47, A:S.150, A:S.150, A:R.175, A:K.269, A:A.325, A:T.326, A:T.326 Salt bridges: A:K.45, A:D.149, A:D.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsutsumi, N. et al., Atypical structural snapshots of human cytomegalovirus GPCR interactions with host G proteins. Sci Adv (2022)

Release Date

2022-01-26

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Antibody fragment scFv16: D
G-protein coupled receptor homolog US27: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
R

Membrane

We predict this structure to be a membrane protein.
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Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Antibody fragment scFv16

G-protein coupled receptor homolog US27

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