SMTL ID : 7rv5.1

Crystal structure of the BCL6 BTB domain in complex with OICR-9287

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-dimer

Ligands

2 x 7RB: 2-[2-(4-benzylpiperidin-1-yl)-4-oxo-3,4-dihydro-7H-pyrrolo[2,3-d]pyrimidin-7-yl]-N-(3-chloropyridin-4-yl)acetamide(Non-covalent)

7RB.1: 14 residues within 4Å: Chain A: M.49, A.50, C.51, S.52, G.53, Y.56, S.57, Q.111, M.112, E.113 Chain B: N.19, R.22, L.23, R.26 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:N.19, A:M.49, A:E.113 Hydrophobic interactions: A:Y.56 pi-Stacking: A:Y.56 7RB.2: 14 residues within 4Å: Chain A: N.19, R.22, L.23, R.26 Chain B: M.49, A.50, C.51, S.52, G.53, Y.56, S.57, Q.111, M.112, E.113 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.56 Hydrogen bonds: B:M.49, B:E.113, A:N.19 pi-Stacking: B:Y.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watson, I. et al., Structure of the BCL6 BTB domain. To Be Published

Release Date

2022-08-24

Peptides

Isoform 2 of B-cell lymphoma 6 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Isoform 2 of B-cell lymphoma 6 protein

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