SMTL ID : 7t0t.1 (2 other biounits)

Crystal structure of the BCL6 BTB domain in complex with OICR-10562

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 2 residues within 4Å: Chain A: E.113 Ligands: E1I.2 No protein-ligand interaction detected (PLIP)

2 x E1I: N-[5-chloro-2-(morpholin-4-yl)pyridin-4-yl]-2-[5-(3-cyano-4-hydroxy-5-methylphenyl)-3-methyl-2-(1-methyl-1H-pyrazol-4-yl)-4-oxo-3,4-dihydro-7H-pyrrolo[2,3-d]pyrimidin-7-yl]acetamide(Non-covalent)

E1I.2: 20 residues within 4Å: Chain A: M.49, A.50, C.51, S.52, G.53, Y.56, F.87, Q.111, M.112, E.113, H.114, V.115 Chain B: H.12, D.15, V.16, N.19, R.22, L.23, R.26 Ligands: DMS.1 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:D.15 Hydrogen bonds: B:H.12, B:N.19, A:M.49, A:E.113, A:H.114, A:V.115 pi-Stacking: A:Y.56 E1I.3: 19 residues within 4Å: Chain A: F.9, H.12, D.15, V.16, N.19, R.22, L.23 Chain B: M.49, A.50, C.51, S.52, G.53, Y.56, F.87, Q.111, M.112, E.113, H.114, V.115 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:M.49, B:E.113, B:H.114, B:V.115, A:H.12 pi-Stacking: B:Y.56 Hydrophobic interactions: A:D.15, A:V.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuntz, D.A. et al., Crystal structure of the BCL6 BTB domain in complex with OICR-10562. To Be Published

Release Date

2022-12-14

Peptides

Isoform 2 of B-cell lymphoma 6 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Isoform 2 of B-cell lymphoma 6 protein

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