- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x CMP: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE(Non-covalent)
- 28 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)
PGW.2: 6 residues within 4Å:- Chain A: G.186, T.187, L.190, F.193
- Chain D: P.213, V.217
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:L.190, A:F.193, D:V.217
PGW.3: 9 residues within 4Å:- Chain A: L.51, F.55, S.57, L.164, H.168, A.185, Y.189
- Ligands: PGW.4, PGW.5
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.55, A:H.168, A:A.185
PGW.4: 2 residues within 4Å:- Ligands: PGW.3, PGW.5
No protein-ligand interaction detected (PLIP)PGW.5: 6 residues within 4Å:- Chain A: Y.44, I.47, R.48, L.58
- Ligands: PGW.3, PGW.4
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.44, A:Y.44, A:R.48, A:L.58
PGW.6: 5 residues within 4Å:- Chain A: I.163, I.237, V.241
- Chain D: L.224, L.232
4 PLIP interactions:1 interactions with chain D, 3 interactions with chain A- Hydrophobic interactions: D:L.232, A:I.163, A:I.237, A:V.241
PGW.7: 7 residues within 4Å:- Chain A: P.50, L.53, L.125, G.169, S.176, L.177
- Ligands: PGW.8
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:P.50, A:L.53, A:L.125, A:L.177
PGW.8: 6 residues within 4Å:- Chain A: T.214, Y.218, V.221, I.222, L.225
- Ligands: PGW.7
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.221, A:V.221, A:L.225
PGW.9: 5 residues within 4Å:- Chain A: L.224, L.232
- Chain C: I.163, I.237, V.241
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: C:I.163, C:I.237, C:V.241, A:L.224, A:L.232
PGW.11: 8 residues within 4Å:- Chain B: G.186, T.187, L.190, F.193
- Chain C: P.213, V.217, V.221, L.224
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain C- Hydrophobic interactions: B:L.190, B:F.193, C:V.217, C:V.217, C:V.221, C:L.224
PGW.12: 9 residues within 4Å:- Chain B: L.51, F.55, S.57, L.164, H.168, A.185, Y.189
- Ligands: PGW.13, PGW.14
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:F.55, B:H.168, B:A.185
PGW.13: 2 residues within 4Å:- Ligands: PGW.12, PGW.14
No protein-ligand interaction detected (PLIP)PGW.14: 6 residues within 4Å:- Chain B: Y.44, I.47, R.48, L.58
- Ligands: PGW.12, PGW.13
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:Y.44, B:Y.44, B:R.48, B:L.58
PGW.15: 5 residues within 4Å:- Chain B: I.163, I.237, V.241
- Chain C: L.224, L.232
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:I.163, B:I.237, B:V.241, C:L.224, C:L.232
PGW.16: 7 residues within 4Å:- Chain B: P.50, L.53, L.125, G.169, S.176, L.177
- Ligands: PGW.17
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:P.50, B:L.53, B:L.125, B:L.177
PGW.17: 6 residues within 4Å:- Chain B: T.214, Y.218, V.221, I.222, L.225
- Ligands: PGW.16
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:V.221, B:V.221, B:L.225
PGW.18: 5 residues within 4Å:- Chain B: L.224, L.232
- Chain D: I.163, I.237, V.241
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain D- Hydrophobic interactions: B:L.224, B:L.232, D:I.163, D:I.237, D:V.241
PGW.20: 8 residues within 4Å:- Chain A: P.213, V.217, V.221, L.224
- Chain C: G.186, T.187, L.190, F.193
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:V.217, A:V.217, A:L.224, C:L.190, C:F.193
PGW.21: 9 residues within 4Å:- Chain C: L.51, F.55, S.57, L.164, H.168, A.185, Y.189
- Ligands: PGW.22, PGW.23
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:F.55, C:H.168, C:A.185
PGW.22: 2 residues within 4Å:- Ligands: PGW.21, PGW.23
No protein-ligand interaction detected (PLIP)PGW.23: 6 residues within 4Å:- Chain C: Y.44, I.47, R.48, L.58
- Ligands: PGW.21, PGW.22
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:Y.44, C:Y.44, C:R.48, C:L.58
PGW.24: 7 residues within 4Å:- Chain C: P.50, L.53, L.125, G.169, S.176, L.177
- Ligands: PGW.25
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:P.50, C:L.53, C:L.125, C:L.177
PGW.25: 6 residues within 4Å:- Chain C: T.214, Y.218, V.221, I.222, L.225
- Ligands: PGW.24
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:V.221, C:V.221, C:L.225
PGW.27: 8 residues within 4Å:- Chain B: P.213, V.217, V.221, L.224
- Chain D: G.186, T.187, L.190, F.193
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain D- Hydrophobic interactions: B:V.217, B:V.221, B:L.224, D:L.190, D:F.193
PGW.28: 9 residues within 4Å:- Chain D: L.51, F.55, S.57, L.164, H.168, A.185, Y.189
- Ligands: PGW.29, PGW.30
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:F.55, D:H.168, D:A.185
PGW.29: 2 residues within 4Å:- Ligands: PGW.28, PGW.30
No protein-ligand interaction detected (PLIP)PGW.30: 6 residues within 4Å:- Chain D: Y.44, I.47, R.48, L.58
- Ligands: PGW.28, PGW.29
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:Y.44, D:Y.44, D:R.48, D:L.58
PGW.31: 7 residues within 4Å:- Chain D: P.50, L.53, L.125, G.169, S.176, L.177
- Ligands: PGW.32
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:P.50, D:L.53, D:L.125, D:L.177
PGW.32: 6 residues within 4Å:- Chain D: T.214, Y.218, V.221, I.222, L.225
- Ligands: PGW.31
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:V.221, D:V.221, D:L.225
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gao, X. et al., Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel. Nat Commun (2022)
- Release Date
- 2022-11-23
- Peptides
- SthK: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
DD
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x CMP: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE(Non-covalent)
- 28 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gao, X. et al., Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel. Nat Commun (2022)
- Release Date
- 2022-11-23
- Peptides
- SthK: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
DD
B - Membrane
-
We predict this structure to be a membrane protein.