SMTL ID : 7s1b.1

Crystal structure of Epstein-Barr virus glycoproteins gH/gL/gp42-peptide in complex with human neutralizing antibodies 769C2 and 770F7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.03 Å

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: N.43, E.46, D.47, S.50 Chain B: Q.10 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.47, A:S.50, B:Q.10 NAG.2: 6 residues within 4Å: Chain A: R.416, L.417, N.418 Chain C: K.106, R.107, P.108 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:L.417 Hydrogen bonds: A:N.418, C:K.106 NAG.3: 2 residues within 4Å: Chain B: A.18, N.21 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:A.18 NAG.4: 3 residues within 4Å: Chain A: E.13 Chain B: N.30, S.94 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, W.H. et al., Epstein-Barr virus gH/gL has multiple sites of vulnerability for virus neutralization and fusion inhibition. Immunity (2022)

Release Date

2022-11-09

Peptides

Envelope glycoprotein H: A
Envelope glycoprotein L: B
770F7 Fab heavy chain: C
770F7 Fab light chain: D
769C2 Fab heavy chain: E
769C2 Fab light chain: F
Soluble gp42: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

E
X

F
Y

G
C

Envelope glycoprotein H

Envelope glycoprotein L

770F7 Fab heavy chain

770F7 Fab light chain

769C2 Fab heavy chain

769C2 Fab light chain

Soluble gp42

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