- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-3-mer
- Ligands
- 9 x CU: COPPER (II) ION(Non-covalent)
- 18 x D10: DECANE(Non-functional Binders)(Non-covalent)
D10.3: 4 residues within 4Å:- Chain A: I.244, V.248
- Ligands: PLC.14, PLC.20
Ligand excluded by PLIPD10.7: 5 residues within 4Å:- Ligands: HXG.6, PLC.13, D10.26, HXG.35, D10.36
Ligand excluded by PLIPD10.16: 7 residues within 4Å:- Chain C: F.229, M.230, F.233
- Ligands: D10.17, D10.19, P1O.56, D10.62
Ligand excluded by PLIPD10.17: 7 residues within 4Å:- Chain C: M.230, F.233, I.234, W.237
- Ligands: D10.16, D10.18, D10.19
Ligand excluded by PLIPD10.18: 7 residues within 4Å:- Chain C: W.237, F.238, R.242
- Ligands: D10.17, P1O.21, D10.51, D10.54
Ligand excluded by PLIPD10.19: 5 residues within 4Å:- Ligands: D10.16, D10.17, D10.54, D10.62, D10.63
Ligand excluded by PLIPD10.26: 5 residues within 4Å:- Ligands: HXG.6, D10.7, PLC.22, HXG.25, D10.36
Ligand excluded by PLIPD10.36: 5 residues within 4Å:- Ligands: D10.7, HXG.25, D10.26, PLC.32, HXG.35
Ligand excluded by PLIPD10.44: 4 residues within 4Å:- Chain F: I.244, V.248
- Ligands: PLC.48, PLC.49
Ligand excluded by PLIPD10.47: 4 residues within 4Å:- Chain G: I.244, V.248
- Ligands: PLC.57, PLC.58
Ligand excluded by PLIPD10.51: 7 residues within 4Å:- Chain H: F.229, M.230, F.233
- Ligands: D10.18, P1O.21, D10.52, D10.54
Ligand excluded by PLIPD10.52: 7 residues within 4Å:- Chain H: M.230, F.233, I.234, W.237
- Ligands: D10.51, D10.53, D10.54
Ligand excluded by PLIPD10.53: 7 residues within 4Å:- Chain H: W.237, F.238, R.242
- Ligands: D10.52, P1O.55, D10.60, D10.63
Ligand excluded by PLIPD10.54: 5 residues within 4Å:- Ligands: D10.18, D10.19, D10.51, D10.52, D10.63
Ligand excluded by PLIPD10.60: 7 residues within 4Å:- Chain I: F.229, M.230, F.233
- Ligands: D10.53, P1O.55, D10.61, D10.63
Ligand excluded by PLIPD10.61: 7 residues within 4Å:- Chain I: M.230, F.233, I.234, W.237
- Ligands: D10.60, D10.62, D10.63
Ligand excluded by PLIPD10.62: 7 residues within 4Å:- Chain I: W.237, F.238, R.242
- Ligands: D10.16, D10.19, P1O.56, D10.61
Ligand excluded by PLIPD10.63: 5 residues within 4Å:- Ligands: D10.19, D10.53, D10.54, D10.60, D10.61
Ligand excluded by PLIP- 18 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
PLC.5: 20 residues within 4Å:- Chain A: T.80
- Chain B: L.197, W.200, F.204, W.205, F.206, M.207, P.214, G.218
- Chain H: L.59, T.62, V.63, I.66, V.67, T.204, F.219, M.223, I.227
- Ligands: HXG.6, PLC.22
Ligand excluded by PLIPPLC.8: 27 residues within 4Å:- Chain B: S.51, F.52, F.56, M.61, L.64, Y.65, I.68, V.69, I.72, T.138, D.139, F.140, Y.149, L.192, P.193, V.195, G.196, E.199
- Chain H: M.150, G.209, K.210, D.211, P.214, V.215, F.218
- Ligands: PLC.48, PLC.49
Ligand excluded by PLIPPLC.10: 19 residues within 4Å:- Chain B: I.28, V.31, F.32, W.35, W.38, Y.39, Y.43, Y.59, N.62, F.63, T.66, E.67, L.70, E.71, T.74, L.150, I.154, I.157
- Ligands: P1O.11
Ligand excluded by PLIPPLC.13: 18 residues within 4Å:- Chain A: Q.145
- Chain B: F.206, E.208, L.210, V.212, Y.217, V.220, I.221, W.224
- Chain C: T.44, V.63, V.67, M.199, M.223
- Ligands: HXG.6, D10.7, PLC.34, HXG.35
Ligand excluded by PLIPPLC.14: 19 residues within 4Å:- Chain A: V.248, M.251, N.255, T.261
- Chain C: R.57, G.151, L.154, Y.157, P.158, W.161, K.210, A.213, P.214, A.217, F.218
- Chain G: Y.381
- Ligands: D10.3, PLC.20, PLC.37
Ligand excluded by PLIPPLC.20: 13 residues within 4Å:- Chain C: K.210, P.214, F.218
- Chain E: I.68, E.71, I.72, F.140, Y.149, P.153, L.192
- Ligands: D10.3, PLC.14, PLC.37
Ligand excluded by PLIPPLC.22: 18 residues within 4Å:- Chain D: F.206, E.208, L.210, V.212, Y.217, V.220, I.221, W.224
- Chain F: Q.145
- Chain H: T.44, V.63, V.67, M.199, M.223
- Ligands: PLC.5, HXG.6, HXG.25, D10.26
Ligand excluded by PLIPPLC.24: 20 residues within 4Å:- Chain D: L.197, W.200, F.204, W.205, F.206, M.207, P.214, G.218
- Chain F: T.80
- Chain I: L.59, T.62, V.63, I.66, V.67, T.204, F.219, M.223, I.227
- Ligands: HXG.25, PLC.32
Ligand excluded by PLIPPLC.27: 27 residues within 4Å:- Chain D: S.51, F.52, F.56, M.61, L.64, Y.65, I.68, V.69, I.72, T.138, D.139, F.140, Y.149, L.192, P.193, V.195, G.196, E.199
- Chain I: M.150, G.209, K.210, D.211, P.214, V.215, F.218
- Ligands: PLC.57, PLC.58
Ligand excluded by PLIPPLC.29: 19 residues within 4Å:- Chain D: I.28, V.31, F.32, W.35, W.38, Y.39, Y.43, Y.59, N.62, F.63, T.66, E.67, L.70, E.71, T.74, L.150, I.154, I.157
- Ligands: P1O.30
Ligand excluded by PLIPPLC.32: 18 residues within 4Å:- Chain E: F.206, E.208, L.210, V.212, Y.217, V.220, I.221, W.224
- Chain G: Q.145
- Chain I: T.44, V.63, V.67, M.199, M.223
- Ligands: PLC.24, HXG.25, HXG.35, D10.36
Ligand excluded by PLIPPLC.34: 20 residues within 4Å:- Chain C: L.59, T.62, V.63, I.66, V.67, T.204, F.219, M.223, I.227
- Chain E: L.197, W.200, F.204, W.205, F.206, M.207, P.214, G.218
- Chain G: T.80
- Ligands: PLC.13, HXG.35
Ligand excluded by PLIPPLC.37: 27 residues within 4Å:- Chain C: M.150, G.209, K.210, D.211, P.214, V.215, F.218
- Chain E: S.51, F.52, F.56, M.61, L.64, Y.65, I.68, V.69, I.72, T.138, D.139, F.140, Y.149, L.192, P.193, V.195, G.196, E.199
- Ligands: PLC.14, PLC.20
Ligand excluded by PLIPPLC.39: 19 residues within 4Å:- Chain E: I.28, V.31, F.32, W.35, W.38, Y.39, Y.43, Y.59, N.62, F.63, T.66, E.67, L.70, E.71, T.74, L.150, I.154, I.157
- Ligands: P1O.40
Ligand excluded by PLIPPLC.48: 13 residues within 4Å:- Chain B: I.68, E.71, I.72, F.140, Y.149, P.153, L.192
- Chain H: K.210, P.214, F.218
- Ligands: PLC.8, D10.44, PLC.49
Ligand excluded by PLIPPLC.49: 19 residues within 4Å:- Chain A: Y.381
- Chain F: V.248, M.251, N.255, T.261
- Chain H: R.57, G.151, L.154, Y.157, P.158, W.161, K.210, A.213, P.214, A.217, F.218
- Ligands: PLC.8, D10.44, PLC.48
Ligand excluded by PLIPPLC.57: 13 residues within 4Å:- Chain D: I.68, E.71, I.72, F.140, Y.149, P.153, L.192
- Chain I: K.210, P.214, F.218
- Ligands: PLC.27, D10.47, PLC.58
Ligand excluded by PLIPPLC.58: 19 residues within 4Å:- Chain F: Y.381
- Chain G: V.248, M.251, N.255, T.261
- Chain I: R.57, G.151, L.154, Y.157, P.158, W.161, K.210, A.213, P.214, A.217, F.218
- Ligands: PLC.27, D10.47, PLC.57
Ligand excluded by PLIP- 6 x HXG: 1,2-dihexanoyl-sn-glycero-3-phosphocholine(Non-covalent)
HXG.6: 14 residues within 4Å:- Chain A: D.82, Q.145, G.146
- Chain B: W.205, F.206, M.207, E.208, P.214, Y.217
- Ligands: PLC.5, D10.7, PLC.13, PLC.22, D10.26
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:W.205, B:P.214, B:Y.217
- Salt bridges: B:E.208
HXG.9: 10 residues within 4Å:- Chain B: L.34, R.37, W.38, G.41, W.114, Y.117, W.118, Y.122
- Chain C: I.102, F.106
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:I.102, C:F.106, B:L.34, B:W.118
HXG.25: 14 residues within 4Å:- Chain D: W.205, F.206, M.207, E.208, P.214, Y.217
- Chain F: D.82, Q.145, G.146
- Ligands: PLC.22, PLC.24, D10.26, PLC.32, D10.36
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:W.205, D:P.214, D:Y.217
- Salt bridges: D:E.208
HXG.28: 10 residues within 4Å:- Chain D: L.34, R.37, W.38, G.41, W.114, Y.117, W.118, Y.122
- Chain H: I.102, F.106
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain H- Hydrophobic interactions: D:L.34, D:W.118, H:I.102, H:F.106
HXG.35: 14 residues within 4Å:- Chain E: W.205, F.206, M.207, E.208, P.214, Y.217
- Chain G: D.82, Q.145, G.146
- Ligands: D10.7, PLC.13, PLC.32, PLC.34, D10.36
4 PLIP interactions:4 interactions with chain E- Hydrophobic interactions: E:W.205, E:P.214, E:Y.217
- Salt bridges: E:E.208
HXG.38: 10 residues within 4Å:- Chain E: L.34, R.37, W.38, G.41, W.114, Y.117, W.118, Y.122
- Chain I: I.102, F.106
4 PLIP interactions:2 interactions with chain E, 2 interactions with chain I- Hydrophobic interactions: E:L.34, E:W.118, I:I.102, I:F.106
- 12 x P1O: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
P1O.11: 20 residues within 4Å:- Chain B: W.21, F.24, A.25, I.28, Y.29, T.74, L.78, Y.81, L.82, R.101, T.104, V.107, W.108, A.111, I.154, I.157, T.158, Y.165, R.169
- Ligands: PLC.10
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:W.21, B:W.21, B:W.21, B:F.24, B:W.108, B:W.108
P1O.12: 19 residues within 4Å:- Chain B: S.76, W.79, G.80, W.83, F.160, F.163, I.164, K.167, I.177, L.182, V.186, F.189
- Chain C: T.247
- Chain H: S.140, L.142, F.143, I.146, V.147
- Ligands: P1O.50
8 PLIP interactions:2 interactions with chain H, 5 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: H:I.146, H:I.146, B:W.83, B:W.83, B:F.160, B:L.182, C:T.247
- Salt bridges: B:K.167
P1O.15: 12 residues within 4Å:- Chain A: R.233, L.240
- Chain C: V.134, L.137, S.138, G.139, S.140, F.143
- Chain E: W.79, F.160, I.164
- Ligands: P1O.41
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain E- Hydrophobic interactions: C:F.143, C:F.143, C:F.143, E:F.160
P1O.21: 19 residues within 4Å:- Chain B: L.179, L.182, V.183, V.186, L.225
- Chain C: W.237, R.242, F.243, L.244, Q.245, S.246, T.247
- Chain H: L.142, F.229, H.232, F.233, R.236
- Ligands: D10.18, D10.51
10 PLIP interactions:5 interactions with chain H, 4 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: H:L.142, H:F.229, H:F.233, C:W.237, C:L.244, B:L.182
- Salt bridges: H:H.232, H:R.236
- Hydrogen bonds: C:Q.245, C:S.246
P1O.30: 20 residues within 4Å:- Chain D: W.21, F.24, A.25, I.28, Y.29, T.74, L.78, Y.81, L.82, R.101, T.104, V.107, W.108, A.111, I.154, I.157, T.158, Y.165, R.169
- Ligands: PLC.29
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:W.21, D:W.21, D:W.21, D:F.24, D:W.108, D:W.108
P1O.31: 19 residues within 4Å:- Chain D: S.76, W.79, G.80, W.83, F.160, F.163, I.164, K.167, I.177, L.182, V.186, F.189
- Chain H: T.247
- Chain I: S.140, L.142, F.143, I.146, V.147
- Ligands: P1O.59
8 PLIP interactions:5 interactions with chain D, 1 interactions with chain H, 2 interactions with chain I- Hydrophobic interactions: D:W.83, D:W.83, D:F.160, D:L.182, H:T.247, I:I.146, I:I.146
- Salt bridges: D:K.167
P1O.40: 20 residues within 4Å:- Chain E: W.21, F.24, A.25, I.28, Y.29, T.74, L.78, Y.81, L.82, R.101, T.104, V.107, W.108, A.111, I.154, I.157, T.158, Y.165, R.169
- Ligands: PLC.39
6 PLIP interactions:6 interactions with chain E- Hydrophobic interactions: E:W.21, E:W.21, E:W.21, E:F.24, E:W.108, E:W.108
P1O.41: 19 residues within 4Å:- Chain C: S.140, L.142, F.143, I.146, V.147
- Chain E: S.76, W.79, G.80, W.83, F.160, F.163, I.164, K.167, I.177, L.182, V.186, F.189
- Chain I: T.247
- Ligands: P1O.15
8 PLIP interactions:1 interactions with chain I, 5 interactions with chain E, 2 interactions with chain C- Hydrophobic interactions: I:T.247, E:W.83, E:W.83, E:F.160, E:L.182, C:I.146, C:I.146
- Salt bridges: E:K.167
P1O.50: 12 residues within 4Å:- Chain B: W.79, F.160, I.164
- Chain F: R.233, L.240
- Chain H: V.134, L.137, S.138, G.139, S.140, F.143
- Ligands: P1O.12
4 PLIP interactions:3 interactions with chain H, 1 interactions with chain B- Hydrophobic interactions: H:F.143, H:F.143, H:F.143, B:F.160
P1O.55: 19 residues within 4Å:- Chain D: L.179, L.182, V.183, V.186, L.225
- Chain H: W.237, R.242, F.243, L.244, Q.245, S.246, T.247
- Chain I: L.142, F.229, H.232, F.233, R.236
- Ligands: D10.53, D10.60
10 PLIP interactions:1 interactions with chain D, 5 interactions with chain I, 4 interactions with chain H- Hydrophobic interactions: D:L.182, I:L.142, I:F.229, I:F.233, H:W.237, H:L.244
- Salt bridges: I:H.232, I:R.236
- Hydrogen bonds: H:Q.245, H:S.246
P1O.56: 19 residues within 4Å:- Chain C: L.142, F.229, H.232, F.233, R.236
- Chain E: L.179, L.182, V.183, V.186, L.225
- Chain I: W.237, R.242, F.243, L.244, Q.245, S.246, T.247
- Ligands: D10.16, D10.62
10 PLIP interactions:4 interactions with chain I, 5 interactions with chain C, 1 interactions with chain E- Hydrophobic interactions: I:W.237, C:L.142, C:F.229, C:F.233, E:L.182
- Hydrogen bonds: I:Q.245, I:S.246, I:S.246
- Salt bridges: C:H.232, C:R.236
P1O.59: 12 residues within 4Å:- Chain D: W.79, F.160, I.164
- Chain G: R.233, L.240
- Chain I: V.134, L.137, S.138, G.139, S.140, F.143
- Ligands: P1O.31
4 PLIP interactions:1 interactions with chain D, 3 interactions with chain I- Hydrophobic interactions: D:F.160, I:F.143, I:F.143, I:F.143
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Koo, C.W. et al., Recovery of particulate methane monooxygenase structure and activity in a lipid bilayer. Science (2022)
- Release Date
- 2022-03-30
- Peptides
- Particulate methane monooxygenase alpha subunit: AFG
Ammonia monooxygenase/methane monooxygenase, subunit C family protein: BDE
Particulate methane monooxygenase beta subunit: CHI - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AF
EG
IB
CD
GE
KC
BH
FI
J - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-3-mer
- Ligands
- 9 x CU: COPPER (II) ION(Non-covalent)
- 18 x D10: DECANE(Non-functional Binders)(Non-covalent)
- 18 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
- 6 x HXG: 1,2-dihexanoyl-sn-glycero-3-phosphocholine(Non-covalent)
- 12 x P1O: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Koo, C.W. et al., Recovery of particulate methane monooxygenase structure and activity in a lipid bilayer. Science (2022)
- Release Date
- 2022-03-30
- Peptides
- Particulate methane monooxygenase alpha subunit: AFG
Ammonia monooxygenase/methane monooxygenase, subunit C family protein: BDE
Particulate methane monooxygenase beta subunit: CHI - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AF
EG
IB
CD
GE
KC
BH
FI
J - Membrane
-
We predict this structure to be a membrane protein.