SMTL ID : 7s63.1

Native-form oocyte/egg Alpha-2-Macroglobulin (A2Moo) tetramer

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

68 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: E.59, N.64 Ligand excluded by PLIP NAG.2: 3 residues within 4Å: Chain A: E.70, N.81, K.82 Ligand excluded by PLIP NAG.3: 4 residues within 4Å: Chain A: N.242, A.295, F.296, Y.297 Ligand excluded by PLIP NAG.4: 1 residues within 4Å: Chain A: N.285 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain A: N.415, T.417, F.444 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain A: V.470, N.472, N.522 Ligand excluded by PLIP NAG.7: 2 residues within 4Å: Chain A: N.526, T.528 Ligand excluded by PLIP NAG.8: 1 residues within 4Å: Chain A: N.578 Ligand excluded by PLIP NAG.9: 3 residues within 4Å: Chain A: Y.249, N.721, T.748 Ligand excluded by PLIP NAG.10: 2 residues within 4Å: Chain A: S.771, N.773 Ligand excluded by PLIP NAG.11: 2 residues within 4Å: Chain A: N.918, T.920 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain A: N.977, Y.1039 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain A: N.1096, S.1098 Ligand excluded by PLIP NAG.14: 1 residues within 4Å: Chain A: N.1266 Ligand excluded by PLIP NAG.15: 2 residues within 4Å: Chain A: E.1258, N.1286 Ligand excluded by PLIP NAG.16: 4 residues within 4Å: Chain A: D.910, N.1252, N.1292, G.1293 Ligand excluded by PLIP NAG.17: 1 residues within 4Å: Chain A: N.1348 Ligand excluded by PLIP NAG.18: 2 residues within 4Å: Chain B: E.59, N.64 Ligand excluded by PLIP NAG.19: 3 residues within 4Å: Chain B: E.70, N.81, K.82 Ligand excluded by PLIP NAG.20: 4 residues within 4Å: Chain B: N.242, A.295, F.296, Y.297 Ligand excluded by PLIP NAG.21: 1 residues within 4Å: Chain B: N.285 Ligand excluded by PLIP NAG.22: 3 residues within 4Å: Chain B: N.415, T.417, F.444 Ligand excluded by PLIP NAG.23: 3 residues within 4Å: Chain B: V.470, N.472, N.522 Ligand excluded by PLIP NAG.24: 3 residues within 4Å: Chain B: V.470, N.526, T.528 Ligand excluded by PLIP NAG.25: 1 residues within 4Å: Chain B: N.578 Ligand excluded by PLIP NAG.26: 3 residues within 4Å: Chain B: Y.249, N.721, T.748 Ligand excluded by PLIP NAG.27: 2 residues within 4Å: Chain B: S.771, N.773 Ligand excluded by PLIP NAG.28: 2 residues within 4Å: Chain B: N.918, T.920 Ligand excluded by PLIP NAG.29: 4 residues within 4Å: Chain B: N.977, L.982, K.1038, Y.1039 Ligand excluded by PLIP NAG.30: 2 residues within 4Å: Chain B: N.1096, S.1098 Ligand excluded by PLIP NAG.31: 1 residues within 4Å: Chain B: N.1266 Ligand excluded by PLIP NAG.32: 2 residues within 4Å: Chain B: E.1258, N.1286 Ligand excluded by PLIP NAG.33: 4 residues within 4Å: Chain B: D.910, N.1252, N.1292, G.1293 Ligand excluded by PLIP NAG.34: 1 residues within 4Å: Chain B: N.1348 Ligand excluded by PLIP NAG.35: 1 residues within 4Å: Chain C: N.64 Ligand excluded by PLIP NAG.36: 2 residues within 4Å: Chain C: E.70, N.81 Ligand excluded by PLIP NAG.37: 4 residues within 4Å: Chain C: N.242, A.295, F.296, Y.297 Ligand excluded by PLIP NAG.38: 1 residues within 4Å: Chain C: N.285 Ligand excluded by PLIP NAG.39: 3 residues within 4Å: Chain C: N.415, T.417, F.444 Ligand excluded by PLIP NAG.40: 3 residues within 4Å: Chain C: V.470, N.472, N.522 Ligand excluded by PLIP NAG.41: 2 residues within 4Å: Chain C: N.526, T.528 Ligand excluded by PLIP NAG.42: 1 residues within 4Å: Chain C: N.578 Ligand excluded by PLIP NAG.43: 3 residues within 4Å: Chain C: Y.249, N.721, T.748 Ligand excluded by PLIP NAG.44: 2 residues within 4Å: Chain C: S.771, N.773 Ligand excluded by PLIP NAG.45: 2 residues within 4Å: Chain C: N.918, T.920 Ligand excluded by PLIP NAG.46: 2 residues within 4Å: Chain C: N.977, Y.1039 Ligand excluded by PLIP NAG.47: 2 residues within 4Å: Chain C: N.1096, S.1098 Ligand excluded by PLIP NAG.48: 1 residues within 4Å: Chain C: N.1266 Ligand excluded by PLIP NAG.49: 2 residues within 4Å: Chain C: E.1258, N.1286 Ligand excluded by PLIP NAG.50: 3 residues within 4Å: Chain C: D.910, N.1292, G.1293 Ligand excluded by PLIP NAG.51: 1 residues within 4Å: Chain C: N.1348 Ligand excluded by PLIP NAG.52: 1 residues within 4Å: Chain D: N.64 Ligand excluded by PLIP NAG.53: 2 residues within 4Å: Chain D: E.70, N.81 Ligand excluded by PLIP NAG.54: 4 residues within 4Å: Chain D: N.242, A.295, F.296, Y.297 Ligand excluded by PLIP NAG.55: 1 residues within 4Å: Chain D: N.285 Ligand excluded by PLIP NAG.56: 3 residues within 4Å: Chain D: N.415, T.417, F.444 Ligand excluded by PLIP NAG.57: 3 residues within 4Å: Chain D: V.470, N.472, N.522 Ligand excluded by PLIP NAG.58: 3 residues within 4Å: Chain D: V.470, N.526, T.528 Ligand excluded by PLIP NAG.59: 1 residues within 4Å: Chain D: N.578 Ligand excluded by PLIP NAG.60: 3 residues within 4Å: Chain D: Y.249, N.721, T.748 Ligand excluded by PLIP NAG.61: 2 residues within 4Å: Chain D: S.771, N.773 Ligand excluded by PLIP NAG.62: 2 residues within 4Å: Chain D: N.918, T.920 Ligand excluded by PLIP NAG.63: 3 residues within 4Å: Chain D: N.977, L.982, Y.1039 Ligand excluded by PLIP NAG.64: 2 residues within 4Å: Chain D: N.1096, S.1098 Ligand excluded by PLIP NAG.65: 1 residues within 4Å: Chain D: N.1266 Ligand excluded by PLIP NAG.66: 2 residues within 4Å: Chain D: E.1258, N.1286 Ligand excluded by PLIP NAG.67: 3 residues within 4Å: Chain D: D.910, N.1292, G.1293 Ligand excluded by PLIP NAG.68: 1 residues within 4Å: Chain D: N.1348 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arimura, Y. et al., Structural Mechanics of the Alpha-2-Macroglobulin Transformation. J.Mol.Biol. (2021)

Release Date

2022-01-05

Peptides

Alpha 2-Macroglobulin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Alpha 2-Macroglobulin

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