SMTL ID : 7s7i.1 (5 other biounits)

Crystal structure of Fab in complex with MICA alpha3 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.19, R.70 Chain B: R.54, R.56 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.19, B:R.56 Water bridges: A:R.70

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: R.39, V.43, S.44 Chain C: Y.92, S.95 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:R.39, A:G.42, A:S.44, C:S.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hogan, J.M. et al., Residue-Level Characterization of Antibody Binding Epitopes Using Carbene Chemical Footprinting. Anal.Chem. (2023)

Release Date

2022-10-05

Peptides

MHC class I chain-related protein A: A
Fab heavy chain: B
Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

MHC class I chain-related protein A

Fab heavy chain

Fab light chain

Related Entries With Identical Sequence