SMTL ID : 7sc8.1

Synechocystis PCC 6803 Phycobilisome rod from PBS sample

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-18-18-1-1-1-1-mer

Ligands

54 x CYC: PHYCOCYANOBILIN(Covalent)

CYC.1: 27 residues within 4Å: Chain A: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, I.115, I.118, F.122, L.124, W.128, Y.129 Chain F: R.57, I.67, Y.74, T.75, S.76, M.79 Ligand excluded by PLIP CYC.2: 26 residues within 4Å: Chain B: L.66, N.72, A.73, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, C.109, L.113, T.116, Y.117, L.120, V.122, P.123, S.126, V.127 Chain c: R.24 Chain d: R.28, Q.29, I.40, R.41, S.43 Ligand excluded by PLIP CYC.3: 20 residues within 4Å: Chain A: L.24, F.28 Chain B: A.32, N.35, K.36, I.38, D.39, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Chain I: R.32, Q.33, D.145, D.148 Ligand excluded by PLIP CYC.4: 28 residues within 4Å: Chain B: R.57, I.67, Y.74, T.75, S.76, M.79 Chain C: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, Y.91, I.94, Y.110, I.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.5: 27 residues within 4Å: Chain D: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, C.109, L.113, T.116, Y.117, L.120, V.122, P.123, S.126, V.127 Chain d: R.18, Y.52, M.55, N.56, M.59, R.60 Ligand excluded by PLIP CYC.6: 19 residues within 4Å: Chain C: F.28 Chain D: A.32, N.35, K.36, I.38, D.39, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Chain G: R.32, Q.33, D.145, D.148 Ligand excluded by PLIP CYC.7: 27 residues within 4Å: Chain D: R.57, I.67, Y.74, T.75, S.76, M.79 Chain E: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, I.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.8: 25 residues within 4Å: Chain F: L.66, N.72, A.73, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, C.109, L.113, Y.117, L.120, V.122, P.123, S.126, V.127 Chain c: S.57, S.60, R.63, G.64 Chain d: L.2, S.5 Ligand excluded by PLIP CYC.9: 18 residues within 4Å: Chain E: L.24, F.28 Chain F: N.35, K.36, I.38, D.39, R.43, V.142, D.144, I.148, T.149, R.150, G.151, C.153 Chain K: R.32, Q.33, D.145, D.148 Ligand excluded by PLIP CYC.10: 27 residues within 4Å: Chain G: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, I.115, I.118, F.122, L.124, W.128, Y.129 Chain L: R.57, I.67, Y.74, T.75, S.76, M.79 Ligand excluded by PLIP CYC.11: 31 residues within 4Å: Chain H: L.66, N.72, A.73, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, C.109, L.113, T.116, Y.117, L.120, V.122, P.123, S.126, V.127 Chain c: T.2, S.3, S.6, F.154, A.155, T.156, Q.157, Q.160, K.161, T.162, F.165 Ligand excluded by PLIP CYC.12: 19 residues within 4Å: Chain C: R.32, Q.33, D.145, D.148 Chain G: L.24, F.28 Chain H: N.35, K.36, I.38, D.39, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Ligand excluded by PLIP CYC.13: 27 residues within 4Å: Chain H: R.57, I.67, Y.74, T.75, S.76, M.79 Chain I: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, I.88, Y.90, Y.110, I.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.14: 30 residues within 4Å: Chain J: L.66, N.72, A.73, R.77, R.78, A.81, C.82, D.85, M.86, I.88, Y.92, R.108, C.109, L.113, T.116, Y.117, L.120, V.122, P.123, S.126, V.127 Chain c: R.41, N.46, D.47, H.48, Y.175, A.176, T.177, S.178, R.180 Ligand excluded by PLIP CYC.15: 19 residues within 4Å: Chain A: R.32, Q.33, D.145, D.148 Chain I: L.24, F.28 Chain J: N.35, K.36, I.38, D.39, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Ligand excluded by PLIP CYC.16: 25 residues within 4Å: Chain J: R.57, I.67, Y.74, T.75, S.76, M.79 Chain K: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, Y.110, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.17: 26 residues within 4Å: Chain L: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, Y.92, R.108, C.109, L.113, Y.117, L.120, V.122, P.123, S.126, V.127 Chain c: Q.92, Q.111, I.114, A.115, T.118 Ligand excluded by PLIP CYC.18: 18 residues within 4Å: Chain E: R.32, Q.33, D.145, D.148 Chain K: F.28 Chain L: N.35, K.36, I.38, D.39, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Ligand excluded by PLIP CYC.19: 28 residues within 4Å: Chain M: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, L.111, I.115, I.118, F.122, L.124, W.128, Y.129 Chain R: R.57, I.67, Y.74, T.75, S.76, M.79 Ligand excluded by PLIP CYC.20: 25 residues within 4Å: Chain N: L.66, N.72, A.73, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, T.116, Y.117, L.120, V.122, P.123, S.126, V.127 Chain c: R.219, Y.250, S.254, L.257, Q.258, N.261 Ligand excluded by PLIP CYC.21: 20 residues within 4Å: Chain M: L.24, F.28 Chain N: N.35, K.36, I.38, D.39, N.42, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Chain S: R.32, Q.33, D.145, D.148 Ligand excluded by PLIP CYC.22: 27 residues within 4Å: Chain N: R.57, I.67, Y.74, T.75, S.76, M.79 Chain O: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, I.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.23: 26 residues within 4Å: Chain P: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, T.116, Y.117, L.120, V.122, P.123, S.126, V.127 Chain b: G.57, S.60, L.61, N.64 Chain c: L.211, G.213 Ligand excluded by PLIP CYC.24: 20 residues within 4Å: Chain O: L.24, F.28 Chain P: N.35, K.36, I.38, D.39, S.40, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Chain W: R.32, Q.33, D.145, D.148 Ligand excluded by PLIP CYC.25: 27 residues within 4Å: Chain P: R.57, I.67, Y.74, T.75, S.76, M.79 Chain Q: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, I.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.26: 27 residues within 4Å: Chain R: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, C.109, L.113, T.116, Y.117, L.120, V.122, P.123, S.126, V.127 Chain b: R.24 Chain c: A.231, R.238, V.239, R.240, R.241 Ligand excluded by PLIP CYC.27: 21 residues within 4Å: Chain Q: L.24, F.28 Chain R: A.32, N.35, K.36, I.38, D.39, N.42, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Chain U: R.32, Q.33, D.145, D.148 Ligand excluded by PLIP CYC.28: 27 residues within 4Å: Chain S: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, I.88, Y.90, Y.110, I.115, I.118, F.122, L.124, W.128, Y.129 Chain X: R.57, I.67, Y.74, T.75, S.76, M.79 Ligand excluded by PLIP CYC.29: 28 residues within 4Å: Chain T: L.66, N.72, A.73, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, T.116, L.120, V.122, P.123, S.126, V.127 Chain b: A.2, I.3, T.4, T.5, N.154, N.155, D.159, R.160, T.161, F.164 Ligand excluded by PLIP CYC.30: 20 residues within 4Å: Chain M: R.32, Q.33, D.145, D.148, E.149 Chain S: F.28 Chain T: A.32, N.35, K.36, I.38, D.39, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Ligand excluded by PLIP CYC.31: 28 residues within 4Å: Chain T: R.57, I.67, Y.74, T.75, M.79 Chain U: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, I.88, Y.90, I.94, Y.110, L.111, I.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.32: 28 residues within 4Å: Chain V: L.66, N.72, A.73, R.77, R.78, A.81, C.82, D.85, M.86, I.88, Y.92, R.108, C.109, L.113, T.116, L.120, V.122, P.123, S.126, V.127 Chain b: R.41, N.46, D.47, Y.48, Y.174, A.175, N.176, S.177 Ligand excluded by PLIP CYC.33: 19 residues within 4Å: Chain Q: R.32, Q.33, D.145, D.148 Chain U: L.24, F.28 Chain V: N.35, K.36, I.38, D.39, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Ligand excluded by PLIP CYC.34: 28 residues within 4Å: Chain V: R.57, I.67, Y.74, T.75, S.76, M.79 Chain W: V.59, Y.60, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, I.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.35: 26 residues within 4Å: Chain X: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, T.116, Y.117, L.120, V.122, P.123, S.126, V.127 Chain b: F.91, Q.92, T.93, E.111, I.115, L.118 Ligand excluded by PLIP CYC.36: 18 residues within 4Å: Chain O: R.32, Q.33, D.145, D.148 Chain W: F.28 Chain X: N.35, K.36, I.38, D.39, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Ligand excluded by PLIP CYC.37: 28 residues within 4Å: Chain 3: R.57, I.67, Y.74, T.75, S.76, M.79 Chain Y: V.59, Y.60, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, I.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.38: 28 residues within 4Å: Chain Z: L.66, N.72, A.73, R.78, A.81, C.82, R.84, D.85, M.86, I.88, Y.92, R.108, C.109, L.113, T.116, Y.117, L.120, V.122, P.123, S.126, V.127 Chain a: V.65, S.68, Q.69, R.71, N.72 Chain b: L.226, G.227 Ligand excluded by PLIP CYC.39: 22 residues within 4Å: Chain 6: R.32, Q.33, D.145, D.148, E.149 Chain Y: L.24, F.28 Chain Z: A.32, N.35, K.36, I.38, D.39, N.42, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Ligand excluded by PLIP CYC.40: 27 residues within 4Å: Chain 0: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, I.115, I.118, F.122, L.124, W.128, Y.129 Chain Z: R.57, I.67, Y.74, T.75, S.76, M.79 Ligand excluded by PLIP CYC.41: 26 residues within 4Å: Chain 1: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, Y.92, R.108, C.109, L.113, Y.117, L.120, V.122, P.123, S.126, V.127 Chain b: S.247, G.250, Y.251, V.254, R.255 Ligand excluded by PLIP CYC.42: 20 residues within 4Å: Chain 0: F.28 Chain 1: A.32, N.35, K.36, I.38, D.39, N.42, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Chain 4: R.32, Q.33, D.145, D.148 Ligand excluded by PLIP CYC.43: 27 residues within 4Å: Chain 1: R.57, I.67, Y.74, T.75, S.76, M.79 Chain 2: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, I.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.44: 24 residues within 4Å: Chain 3: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, C.109, L.113, T.116, Y.117, L.120, V.122, S.126, V.127 Chain b: F.265, L.268, N.269, L.272 Ligand excluded by PLIP CYC.45: 21 residues within 4Å: Chain 2: L.24, F.28 Chain 3: A.32, N.35, K.36, I.38, D.39, N.42, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Chain 8: R.32, Q.33, D.145, D.148 Ligand excluded by PLIP CYC.46: 27 residues within 4Å: Chain 4: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, Y.91, Y.110, I.115, I.118, F.122, L.124, W.128, Y.129 Chain 9: R.57, I.67, Y.74, T.75, S.76, M.79 Ligand excluded by PLIP CYC.47: 26 residues within 4Å: Chain 5: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, Y.92, R.108, C.109, L.113, Y.117, L.120, V.122, P.123, S.126, V.127 Chain a: F.55, N.175, I.176, R.180, Y.181 Ligand excluded by PLIP CYC.48: 21 residues within 4Å: Chain 0: R.32, Q.33, D.145, D.148, E.149 Chain 4: L.24, F.28 Chain 5: A.32, N.35, K.36, I.38, D.39, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Ligand excluded by PLIP CYC.49: 29 residues within 4Å: Chain 5: R.57, I.67, Y.74, T.75, S.76, M.79 Chain 6: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, I.88, Y.90, I.94, Y.110, L.111, I.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.50: 28 residues within 4Å: Chain 7: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, Y.92, R.108, C.109, L.113, Y.117, L.120, V.122, P.123, S.126, V.127 Chain a: L.6, N.100, Y.101, I.123, S.126, I.127, A.130 Ligand excluded by PLIP CYC.51: 20 residues within 4Å: Chain 6: L.24, F.28 Chain 7: A.32, N.35, K.36, I.38, D.39, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Chain Y: R.32, Q.33, D.145, D.148 Ligand excluded by PLIP CYC.52: 27 residues within 4Å: Chain 7: R.57, I.67, Y.74, T.75, S.76, M.79 Chain 8: V.59, T.66, N.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, I.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.53: 31 residues within 4Å: Chain 9: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, C.109, L.113, T.116, Y.117, L.120, V.122, P.123, S.126, V.127 Chain a: S.12, Q.13, N.14, R.16, V.17, E.18, G.19, R.161, L.164, R.167 Ligand excluded by PLIP CYC.54: 22 residues within 4Å: Chain 2: R.32, Q.33, D.145, D.148 Chain 8: L.24, F.28 Chain 9: A.32, N.35, K.36, I.38, D.39, S.40, N.42, R.43, V.142, N.143, D.144, I.148, T.149, R.150, G.151, C.153 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dominguez-Martin, M.A. et al., Structures of a phycobilisome in light-harvesting and photoprotected states. Nature (2022)

Release Date

2022-08-31

Peptides

C-phycocyanin alpha subunit: ACEGIKMOQSUWY02468
C-phycocyanin beta subunit: BDFHJLNPRTVXZ13579
Phycobilisome rod-core linker polypeptide CpcG: a
Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 1: b
Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 2: c
Phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod: d

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AA

C
AC

E
AE

G
AG

I
AI

K
AK

M
AM

O
AO

Q
AQ

S
AS

U
AU

W
AW

Y
AY

0
BA

2
BC

4
BE

6
BG

8
BI

B
AB

D
AD

F
AF

H
AH

J
AJ

L
AL

N
AN

P
AP

R
AR

T
AT

V
AV

X
AX

Z
AZ

1
BB

3
BD

5
BF

7
BH

9
BJ

a
BK

b
BL

c
BM

d
BN

C-phycocyanin alpha subunit

C-phycocyanin beta subunit

Phycobilisome rod-core linker polypeptide CpcG

Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 1

Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 2

Phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod

Related Entries With Identical Sequence