SMTL ID : 7sgu.1

Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with PLP_Snyder608 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x 9EI: 5-amino-N-(naphthalen-1-yl)pyridine-3-carboxamide(Non-covalent)

9EI.1: 8 residues within 4Å: Chain A: G.166, D.167, M.211, P.250, Y.267, Y.271, Q.272, Y.276 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.250 Hydrogen bonds: A:D.167, A:D.167, A:Q.272, A:Y.276 pi-Stacking: A:Y.271

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.192, C.195, C.227, C.229 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.192, A:C.195, A:C.227, A:C.229

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: H.76, N.131, P.132, H.178 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: K.129, F.130, Q.136 Ligand excluded by PLIP

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 4 residues within 4Å: Chain A: H.20, Q.22, D.64, L.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.22 FMT.6: 3 residues within 4Å: Chain A: C.195, G.196, Q.198 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with PLP_Snyder608 inhibitor. To Be Published

Release Date

2021-10-20

Peptides

Papain-like protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease

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