SMTL ID : 7shz.2 (1 other biounit)

IgE-Fc in complex with HAE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-2-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.1: 7 residues within 4Å: Chain C: Y.41, L.61, V.63, D.64, R.95, N.96, T.100 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.2: 2 residues within 4Å: Chain C: N.73, T.75 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.73 NAG.3: 1 residues within 4Å: Chain F: N.73 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pennington, L.F. et al., Directed evolution of and structural insights into antibody-mediated disruption of a stable receptor-ligand complex. Nat Commun (2021)

Release Date

2021-12-22

Peptides

HAE Variable fragment Heavy chain: AD
HAE Variable fragment Light chain: BE
IgE Fc: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

D
I

B
L

E
J

C
H

F
G

HAE Variable fragment Heavy chain

HAE Variable fragment Light chain

IgE Fc

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