SMTL ID : 7si0.1 (1 other biounit)

IgE-Fc in complex with 813

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-2-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 9 residues within 4Å: Chain A: Y.41, L.61, V.63, L.65, Q.94, N.96, T.98, T.100 Ligands: MAN-MAN.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.41, A:S.39, A:S.39

1 x MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose(Non-covalent)

MAN-MAN.2: 4 residues within 4Å: Chain A: S.43, R.44, S.46 Ligands: NAG-NAG-BMA-MAN.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.43, A:S.43

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.3: 7 residues within 4Å: Chain D: Y.41, L.61, V.63, Q.94, N.96, T.98, T.100 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Y.41

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 2 residues within 4Å: Chain B: S.52, W.107 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.52, B:S.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pennington, L.F. et al., Directed evolution of and structural insights into antibody-mediated disruption of a stable receptor-ligand complex. Nat Commun (2021)

Release Date

2021-12-15

Peptides

IgE Fc: AD
813 Variable fragment Heavy chain: BE
813 Variable fragment Light chain: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

D
A

B
E

E
C

C
F

F
D

IgE Fc

813 Variable fragment Heavy chain

813 Variable fragment Light chain

Related Entries With Identical Sequence