SMTL ID : 7sqb.1

PPAR gamma LBD bound to Inverse Agonist SR10221

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

2 x A8R: (2S)-2-{5-[(5-{[(1S)-1-(4-tert-butylphenyl)ethyl]carbamoyl}-2,3-dimethyl-1H-indol-1-yl)methyl]-2-chlorophenoxy}propanoic acid(Non-covalent)

A8R.1: 17 residues within 4Å: Chain A: I.75, F.77, G.97, C.98, F.100, R.101, S.102, A.105, I.139, M.142, L.143, L.146, L.153, I.154, S.155, Y.286 Ligands: A8R.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.75, A:F.77, A:F.100, A:F.100, A:F.100, A:R.101, A:M.142, A:L.143, A:L.146, A:I.154, A:I.154, A:Y.286 Salt bridges: A:R.101 A8R.2: 16 residues within 4Å: Chain A: G.71, E.72, K.74, I.75, F.77, K.78, H.79, I.92, R.93, Q.96, I.154, S.155, Q.158, G.159, M.161 Ligands: A8R.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.74, A:I.75, A:F.77, A:H.79, A:R.93, A:I.154 Hydrogen bonds: A:Q.96 Salt bridges: A:H.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frkic, R.L. et al., PPAR gamma Corepression Involves Alternate Ligand Conformation and Inflation of H12 Ensembles. Acs Chem.Biol. (2023)

Release Date

2023-05-10

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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