SMTL ID : 7sv2.2 (3 other biounits)

Human Cytochrome P450 (CYP) 3A5 ternary complex with azamulin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: R.84, I.97, S.98, W.105, R.109, F.281, A.284, G.285, T.288, V.348, A.349, L.352, R.354, P.412, F.413, G.414, T.415, R.418, N.419, C.420, I.421, F.425, A.426, M.430 Ligands: MWY.2 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:I.97, A:F.281, A:F.281, A:A.284, A:V.348, A:A.349, A:L.352, A:F.413, A:F.413, A:I.421 Hydrogen bonds: A:T.415 Water bridges: A:R.354 Salt bridges: A:R.84, A:R.84, A:R.109, A:R.354, A:R.418 Metal complexes: A:C.420

2 x MWY: (3aS,4R,5S,6R,8R,9R,9aR,10R)-6-ethyl-5-hydroxy-4,6,9,10-tetramethyl-1-oxodecahydro-3a,9-propanocyclopenta[8]annulen-8-yl [(5-amino-1H-1,2,4-triazol-3-yl)sulfanyl]acetate(Non-covalent)

MWY.2: 14 residues within 4Å: Chain A: R.84, S.98, L.99, F.189, I.280, F.283, A.284, E.287, T.288, A.349, L.460, Q.462 Ligands: HEM.1, MWY.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.189, A:I.280, A:F.283, A:T.288, A:L.460 Hydrogen bonds: A:S.98, A:L.460, A:Q.462 MWY.3: 16 residues within 4Å: Chain A: R.84, R.85, S.98, L.99, L.190, G.193, F.194, F.199, A.349, I.350, R.351, E.353, R.418, G.459, L.460 Ligands: MWY.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.190, A:F.194, A:F.199, A:R.351, A:E.353 Hydrogen bonds: A:R.84, A:R.84, A:R.85, A:R.85, A:S.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hsu, M.H. et al., Structural characterization of the homotropic cooperative binding of azamulin to human cytochrome P450 3A5. J.Biol.Chem. (2022)

Release Date

2022-05-18

Peptides

Cytochrome P450 3A5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cytochrome P450 3A5

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