SMTL ID : 8sg5.5 (7 other biounits)

Cytochrome P450 (CYP) 3A5 crystallized with clotrimazole

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: R.84, I.97, S.98, W.105, R.109, F.116, A.284, G.285, T.288, L.343, V.348, A.349, L.352, R.354, P.412, F.413, G.414, R.418, N.419, C.420, I.421, G.422, A.426, M.430 Ligands: CL6.2 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:I.97, A:F.116, A:L.343, A:V.348, A:A.349, A:L.352, A:F.413, A:F.413, A:I.421 Salt bridges: A:R.84, A:R.84, A:R.109, A:R.354, A:R.418 Metal complexes: A:C.420

3 x CL6: 1-[(2-CHLOROPHENYL)(DIPHENYL)METHYL]-1H-IMIDAZOLE(Non-covalent)

CL6.2: 11 residues within 4Å: Chain A: R.84, F.192, F.283, A.284, T.288, V.348, A.349, G.459, L.460 Ligands: HEM.1, CL6.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.192, A:F.192, A:F.283, A:A.284, A:T.288, A:A.349, A:L.460 pi-Stacking: A:F.283 CL6.3: 11 residues within 4Å: Chain A: R.85, S.86, V.90, S.98, L.99, F.192, F.199, L.219, F.220 Ligands: CL6.2, CL6.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.99, A:F.192, A:F.192, A:F.199, A:L.219 Hydrogen bonds: A:S.98 pi-Stacking: A:F.199, A:F.199 CL6.4: 16 residues within 4Å: Chain A: Y.32, L.36, E.55, R.85, F.192, G.193, F.194, L.195, D.196, F.199, L.200, T.457, Q.458, G.459 Ligands: CL6.3, CE9.5 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.32, A:Y.32, A:L.36, A:F.192, A:F.192 Hydrogen bonds: A:D.196

1 x CE9: DODECYL NONA ETHYLENE GLYCOL ETHER(Non-covalent)

CE9.5: 10 residues within 4Å: Chain A: L.26, V.29, Y.32, R.33, L.195, L.200, S.201, L.204, T.457 Ligands: CL6.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.26, A:L.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hsu, M.H. et al., Differential Effects of Clotrimazole on X-Ray Crystal Structures of Human Cytochromes P450 3A5 and 3A4. Drug Metab.Dispos. (2023)

Release Date

2023-10-11

Peptides

Cytochrome P450 3A5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Cytochrome P450 3A5

Related Entries With Identical Sequence