SMTL ID : 7szb.2 (1 other biounit)

Crystal Structure Analysis of human PRPK complex with a compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DQ4: 5-amino-2-[(3R)-2,6-dioxopiperidin-3-yl]-1H-isoindole-1,3(2H)-dione(Non-covalent)

DQ4.1: 15 residues within 4Å: Chain A: V.41, K.42, R.51, V.60, P.101, M.115, E.116, E.117, I.118, E.119, G.120, S.121, L.171, I.184, D.185 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.60, A:P.101, A:L.171, A:I.184, A:I.184 Hydrogen bonds: A:E.117, A:E.117, A:I.118, A:G.120, A:S.121, A:D.185 Water bridges: A:K.62, A:E.86

1 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 11 residues within 4Å: Chain A: G.44, A.45, E.46, A.47, K.62, R.64, R.82, D.164, D.185, G.187, L.188 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.188 Hydrogen bonds: A:A.45, A:E.46, A:A.47, A:R.82 Water bridges: A:N.169, A:N.169 Salt bridges: A:K.62, A:K.62, A:R.64, A:R.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seo, H.-S. et al., Development of PRPK Directed Phthalimides. Biorxiv (2021)

Release Date

2023-01-25

Peptides

EKC/KEOPS complex subunit TP53RK: A
EKC/KEOPS complex subunit TPRKB: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

EKC/KEOPS complex subunit TP53RK

EKC/KEOPS complex subunit TPRKB

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