SMTL ID : 7szd.1 (1 other biounit)

Crystal Structure Analysis of human PRPK complex with a compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DVO: 2-[(3R)-3-methyl-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindole-5-carboxylic acid(Non-covalent)

DVO.1: 13 residues within 4Å: Chain A: K.42, V.60, K.62, E.86, M.115, E.117, I.118, E.119, G.120, S.121, L.171, I.184, D.185 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.60, A:L.171, A:I.184 Hydrogen bonds: A:E.117, A:I.118, A:G.120, A:S.121, A:D.185 Water bridges: A:E.86, A:E.86 Salt bridges: A:K.42, A:K.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seo, H.-S. et al., Development of PRPK Directed Phthalimides. Biorxiv (2021)

Release Date

2022-12-14

Peptides

EKC/KEOPS complex subunit TP53RK: A
EKC/KEOPS complex subunit TPRKB: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

EKC/KEOPS complex subunit TP53RK

EKC/KEOPS complex subunit TPRKB

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