SMTL ID : 7t1y.1

Structure of the Fbw7-Skp1-MycCdegron complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain B: Q.178, H.218, R.426 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.138, B:Q.178 Salt bridges: B:R.426 SO4.2: 2 residues within 4Å: Chain B: R.255, R.424 6 PLIP interactions: 6 interactions with chain B Water bridges: B:R.215, B:R.215, B:R.255, B:R.255 Salt bridges: B:R.255, B:R.424 SO4.3: 5 residues within 4Å: Chain B: N.151, G.172, G.173, T.189 Chain C: P.12 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.151, B:G.173, B:T.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Welcker, M. et al., Two diphosphorylated degrons control c-Myc degradation by the Fbw7 tumor suppressor. Sci Adv (2022)

Release Date

2022-02-16

Peptides

S-phase kinase-associated protein 1: A
F-box/WD repeat-containing protein 7: B
Myc proto-oncogene protein C terminal degron: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

S-phase kinase-associated protein 1

F-box/WD repeat-containing protein 7

Myc proto-oncogene protein C terminal degron

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