SMTL ID : 7t1z.1

Structure of the Fbw7-Skp1-MycNdegron complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.77 Å

Oligo State

hetero-1-1-1-mer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain B: Q.138, Q.178, H.218, R.426 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.138, B:Q.178 Salt bridges: B:R.426 SO4.2: 3 residues within 4Å: Chain B: R.215, R.255, R.424 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.215 Water bridges: B:R.424 Salt bridges: B:R.255, B:R.424 SO4.3: 1 residues within 4Å: Chain B: R.191 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.191 SO4.4: 5 residues within 4Å: Chain B: N.142, R.143, S.157, V.159, T.160 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.157 Water bridges: B:R.143, B:R.143 Salt bridges: B:R.143 SO4.5: 2 residues within 4Å: Chain B: R.165, T.166 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.166 Salt bridges: B:R.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Welcker, M. et al., Two diphosphorylated degrons control c-Myc degradation by the Fbw7 tumor suppressor. Sci Adv (2022)

Release Date

2022-02-16

Peptides

S-phase kinase-associated protein 1: A
F-box/WD repeat-containing protein 7: B
Myc proto-oncogene N terminal degron: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

S-phase kinase-associated protein 1

F-box/WD repeat-containing protein 7

Myc proto-oncogene N terminal degron

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