SMTL ID : 7t24.1

Crystal Structure of Adenylosuccinate lyase (ASL) from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-tetramer

Ligands

12 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 6 residues within 4Å: Chain A: Y.24, I.314, N.318 Chain B: S.349, T.350, R.353 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.314, A:N.318 Hydrogen bonds: A:Y.24, A:N.318 IPA.2: 3 residues within 4Å: Chain A: E.243, G.247, L.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.247 IPA.3: 6 residues within 4Å: Chain A: L.226, V.232, D.233, W.234, E.235 Chain D: N.456 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:L.226, A:W.234, D:N.456 Hydrogen bonds: A:W.234, A:E.235, A:E.235 IPA.5: 6 residues within 4Å: Chain A: S.349, T.350, R.353 Chain B: Y.24, I.314, N.318 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.314, B:N.318 Hydrogen bonds: B:Y.24, B:N.318 IPA.6: 3 residues within 4Å: Chain B: E.243, G.247, L.248 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.247 IPA.7: 6 residues within 4Å: Chain B: L.226, V.232, D.233, W.234, E.235 Chain C: N.456 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:L.226, B:W.234, C:N.456 Hydrogen bonds: B:W.234, B:E.235, B:E.235 IPA.9: 6 residues within 4Å: Chain C: Y.24, I.314, N.318 Chain D: S.349, T.350, R.353 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:I.314, C:N.318 Hydrogen bonds: C:N.318 IPA.10: 3 residues within 4Å: Chain C: E.243, G.247, L.248 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.247 IPA.11: 6 residues within 4Å: Chain B: N.456 Chain C: L.226, V.232, D.233, W.234, E.235 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:L.226, C:W.234, B:N.456 Hydrogen bonds: C:W.234, C:E.235, C:E.235, C:E.235 IPA.13: 6 residues within 4Å: Chain C: S.349, T.350, R.353 Chain D: Y.24, I.314, N.318 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:I.314, D:N.318 Hydrogen bonds: D:N.318 IPA.14: 3 residues within 4Å: Chain D: E.243, G.247, L.248 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:G.247 IPA.15: 6 residues within 4Å: Chain A: N.456 Chain D: L.226, V.232, D.233, W.234, E.235 7 PLIP interactions: 6 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:L.226, D:W.234, A:N.456 Hydrogen bonds: D:W.234, D:E.235, D:E.235, D:E.235

4 x IMD: IMIDAZOLE(Non-covalent)

IMD.4: 3 residues within 4Å: Chain A: P.33, R.42, E.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.42, A:R.42, A:E.145 IMD.8: 3 residues within 4Å: Chain B: P.33, R.42, E.145 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.42, B:R.42, B:E.145 IMD.12: 3 residues within 4Å: Chain C: P.33, R.42, E.145 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.42, C:R.42, C:E.145 IMD.16: 3 residues within 4Å: Chain D: P.33, R.42, E.145 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.42, D:R.42, D:E.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dranow, D.M. et al., Crystal Structure of Adenylosuccinate lyase (ASL) from Pseudomonas aeruginosa. to be published

Release Date

2021-12-15

Peptides

Adenylosuccinate lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Adenylosuccinate lyase

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