- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-3-mer
- Ligands
- 5 x CU: COPPER (II) ION(Non-covalent)
- 9 x P1O: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
P1O.3: 16 residues within 4Å:- Chain B: W.21, F.24, L.78, L.82, E.97, R.100, R.101, T.104, V.107, W.108, A.111, I.154, I.157, T.158, Y.165, R.169
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:W.21, B:W.108, B:A.111
- Hydrogen bonds: B:R.100, B:Y.165
P1O.4: 17 residues within 4Å:- Chain B: A.75, S.76, W.79, G.80, W.83, F.160, F.163, I.164, I.177, L.182, V.186, F.189
- Chain C: T.247
- Chain F: S.140, L.142, F.143, I.146
13 PLIP interactions:10 interactions with chain B, 2 interactions with chain F, 1 interactions with chain C- Hydrophobic interactions: B:W.79, B:W.79, B:W.83, B:W.83, B:F.160, B:F.163, B:I.164, B:L.182, B:F.189, B:F.189, F:L.142, F:I.146, C:T.247
P1O.9: 19 residues within 4Å:- Chain B: L.179, L.182, V.183, L.225
- Chain C: W.237, R.242, F.243, L.244, Q.245, S.246, T.247
- Chain F: Y.141, L.142, F.229, H.232, F.233, R.236
- Ligands: D10.8, D10.15
12 PLIP interactions:5 interactions with chain F, 2 interactions with chain C, 5 interactions with chain B- Hydrophobic interactions: F:F.229, F:F.229, F:F.233, C:L.244, B:L.179, B:L.179, B:L.182, B:V.183, B:L.225
- Salt bridges: F:H.232, F:R.236
- Hydrogen bonds: C:Q.245
P1O.10: 16 residues within 4Å:- Chain D: W.21, F.24, L.78, L.82, E.97, R.100, R.101, T.104, V.107, W.108, A.111, I.154, I.157, T.158, Y.165, R.169
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:W.21, D:W.108, D:A.111
- Hydrogen bonds: D:R.100, D:Y.165
P1O.11: 17 residues within 4Å:- Chain D: A.75, S.76, W.79, G.80, W.83, F.160, F.163, I.164, I.177, L.182, V.186, F.189
- Chain F: T.247
- Chain G: S.140, L.142, F.143, I.146
12 PLIP interactions:1 interactions with chain F, 1 interactions with chain G, 10 interactions with chain D- Hydrophobic interactions: F:T.247, G:L.142, D:W.79, D:W.79, D:W.83, D:W.83, D:F.160, D:F.163, D:I.164, D:L.182, D:F.189, D:F.189
P1O.12: 16 residues within 4Å:- Chain E: W.21, F.24, L.78, L.82, E.97, R.100, R.101, T.104, V.107, W.108, A.111, I.154, I.157, T.158, Y.165, R.169
5 PLIP interactions:5 interactions with chain E- Hydrophobic interactions: E:W.21, E:W.108, E:A.111
- Hydrogen bonds: E:R.100, E:Y.165
P1O.13: 17 residues within 4Å:- Chain C: S.140, L.142, F.143, I.146
- Chain E: A.75, S.76, W.79, G.80, W.83, F.160, F.163, I.164, I.177, L.182, V.186, F.189
- Chain G: T.247
12 PLIP interactions:10 interactions with chain E, 1 interactions with chain C, 1 interactions with chain G- Hydrophobic interactions: E:W.79, E:W.79, E:W.83, E:W.83, E:F.160, E:F.163, E:I.164, E:L.182, E:F.189, E:F.189, C:L.142, G:T.247
P1O.18: 19 residues within 4Å:- Chain D: L.179, L.182, V.183, L.225
- Chain F: W.237, R.242, F.243, L.244, Q.245, S.246, T.247
- Chain G: Y.141, L.142, F.229, H.232, F.233, R.236
- Ligands: D10.17, D10.21
12 PLIP interactions:2 interactions with chain F, 5 interactions with chain G, 5 interactions with chain D- Hydrophobic interactions: F:L.244, G:F.229, G:F.229, G:F.233, D:L.179, D:L.179, D:L.182, D:V.183, D:L.225
- Hydrogen bonds: F:Q.245
- Salt bridges: G:H.232, G:R.236
P1O.19: 19 residues within 4Å:- Chain C: Y.141, L.142, F.229, H.232, F.233, R.236
- Chain E: L.179, L.182, V.183, L.225
- Chain G: W.237, R.242, F.243, L.244, Q.245, S.246, T.247
- Ligands: D10.6, D10.23
12 PLIP interactions:5 interactions with chain E, 5 interactions with chain C, 2 interactions with chain G- Hydrophobic interactions: E:L.179, E:L.179, E:L.182, E:V.183, E:L.225, C:F.229, C:F.229, C:F.233, G:L.244
- Salt bridges: C:H.232, C:R.236
- Hydrogen bonds: G:Q.245
- 3 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
PLC.5: 19 residues within 4Å:- Chain A: M.251, N.255, T.261
- Chain C: I.130, V.147, M.150, G.151, L.154, I.155, Y.157, P.158, W.161, K.210, D.211, A.213, P.214, A.217, F.218
- Chain I: Y.381
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:L.154, C:L.154, C:L.154, C:I.155, C:Y.157, C:A.213, C:A.217
- Hydrogen bonds: C:A.213
PLC.14: 19 residues within 4Å:- Chain A: Y.381
- Chain F: I.130, V.147, M.150, G.151, L.154, I.155, Y.157, P.158, W.161, K.210, D.211, A.213, P.214, A.217, F.218
- Chain H: M.251, N.255, T.261
8 PLIP interactions:8 interactions with chain F- Hydrophobic interactions: F:L.154, F:L.154, F:L.154, F:I.155, F:Y.157, F:A.213, F:A.217
- Hydrogen bonds: F:A.213
PLC.20: 19 residues within 4Å:- Chain G: I.130, V.147, M.150, G.151, L.154, I.155, Y.157, P.158, W.161, K.210, D.211, A.213, P.214, A.217, F.218
- Chain H: Y.381
- Chain I: M.251, N.255, T.261
8 PLIP interactions:8 interactions with chain G- Hydrophobic interactions: G:L.154, G:L.154, G:L.154, G:I.155, G:Y.157, G:A.213, G:A.217
- Hydrogen bonds: G:A.213
- 9 x D10: DECANE(Non-covalent)
D10.6: 6 residues within 4Å:- Chain C: F.229, M.230, F.233
- Ligands: D10.7, P1O.19, D10.23
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:F.229, C:F.233, C:F.233
D10.7: 6 residues within 4Å:- Chain C: M.230, F.233, I.234, W.237
- Ligands: D10.6, D10.8
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:F.233, C:I.234
D10.8: 7 residues within 4Å:- Chain C: I.234, W.237, F.238, R.242
- Ligands: D10.7, P1O.9, D10.15
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:I.234, C:W.237, C:F.238
D10.15: 6 residues within 4Å:- Chain F: F.229, M.230, F.233
- Ligands: D10.8, P1O.9, D10.16
3 PLIP interactions:3 interactions with chain F- Hydrophobic interactions: F:F.229, F:F.233, F:F.233
D10.16: 6 residues within 4Å:- Chain F: M.230, F.233, I.234, W.237
- Ligands: D10.15, D10.17
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:F.233, F:I.234
D10.17: 7 residues within 4Å:- Chain F: I.234, W.237, F.238, R.242
- Ligands: D10.16, P1O.18, D10.21
3 PLIP interactions:3 interactions with chain F- Hydrophobic interactions: F:I.234, F:W.237, F:F.238
D10.21: 6 residues within 4Å:- Chain G: F.229, M.230, F.233
- Ligands: D10.17, P1O.18, D10.22
3 PLIP interactions:3 interactions with chain G- Hydrophobic interactions: G:F.229, G:F.233, G:F.233
D10.22: 6 residues within 4Å:- Chain G: M.230, F.233, I.234, W.237
- Ligands: D10.21, D10.23
2 PLIP interactions:2 interactions with chain G- Hydrophobic interactions: G:F.233, G:I.234
D10.23: 7 residues within 4Å:- Chain G: I.234, W.237, F.238, R.242
- Ligands: D10.6, P1O.19, D10.22
3 PLIP interactions:3 interactions with chain G- Hydrophobic interactions: G:I.234, G:W.237, G:F.238
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Koo, C.W. et al., Recovery of particulate methane monooxygenase structure and activity in a lipid bilayer. Science (2022)
- Release Date
- 2022-03-30
- Peptides
- Particulate methane monooxygenase alpha subunit: AHI
Ammonia monooxygenase/methane monooxygenase, subunit C family protein: BDE
Particulate methane monooxygenase beta subunit: CFG - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AH
EI
IB
CD
GE
KC
BF
FG
J - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-3-mer
- Ligands
- 5 x CU: COPPER (II) ION(Non-covalent)
- 9 x P1O: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- 3 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
- 9 x D10: DECANE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Koo, C.W. et al., Recovery of particulate methane monooxygenase structure and activity in a lipid bilayer. Science (2022)
- Release Date
- 2022-03-30
- Peptides
- Particulate methane monooxygenase alpha subunit: AHI
Ammonia monooxygenase/methane monooxygenase, subunit C family protein: BDE
Particulate methane monooxygenase beta subunit: CFG - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AH
EI
IB
CD
GE
KC
BF
FG
J - Membrane
-
We predict this structure to be a membrane protein.