- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-3-mer
- Ligands
- 9 x CU: COPPER (II) ION(Non-covalent)
- 15 x D10: DECANE(Non-functional Binders)(Non-covalent)
D10.3: 4 residues within 4Å:- Chain A: I.244, V.248
- Ligands: PLC.13, PLC.18
No protein-ligand interaction detected (PLIP)D10.6: 3 residues within 4Å:- Ligands: PLC.12, D10.23, D10.31
No protein-ligand interaction detected (PLIP)D10.14: 6 residues within 4Å:- Chain C: F.229, M.230, F.233
- Ligands: D10.16, P1O.43, D10.47
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:F.229, C:F.233, C:F.233, C:F.233
D10.15: 7 residues within 4Å:- Chain C: I.234, W.237, F.238, R.242
- Ligands: P1O.19, D10.39, D10.41
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:W.237, C:F.238
D10.16: 4 residues within 4Å:- Ligands: D10.14, D10.41, D10.47, D10.48
No protein-ligand interaction detected (PLIP)D10.23: 3 residues within 4Å:- Ligands: D10.6, PLC.20, D10.31
No protein-ligand interaction detected (PLIP)D10.31: 3 residues within 4Å:- Ligands: D10.6, D10.23, PLC.29
No protein-ligand interaction detected (PLIP)D10.39: 6 residues within 4Å:- Chain F: F.229, M.230, F.233
- Ligands: D10.15, P1O.19, D10.41
4 PLIP interactions:4 interactions with chain F- Hydrophobic interactions: F:F.229, F:F.233, F:F.233, F:F.233
D10.40: 7 residues within 4Å:- Chain F: I.234, W.237, F.238, R.242
- Ligands: P1O.42, D10.46, D10.48
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:W.237, F:F.238
D10.41: 4 residues within 4Å:- Ligands: D10.15, D10.16, D10.39, D10.48
No protein-ligand interaction detected (PLIP)D10.46: 6 residues within 4Å:- Chain G: F.229, M.230, F.233
- Ligands: D10.40, P1O.42, D10.48
4 PLIP interactions:4 interactions with chain G- Hydrophobic interactions: G:F.229, G:F.233, G:F.233, G:F.233
D10.47: 7 residues within 4Å:- Chain G: I.234, W.237, F.238, R.242
- Ligands: D10.14, D10.16, P1O.43
2 PLIP interactions:2 interactions with chain G- Hydrophobic interactions: G:W.237, G:F.238
D10.48: 4 residues within 4Å:- Ligands: D10.16, D10.40, D10.41, D10.46
No protein-ligand interaction detected (PLIP)D10.49: 4 residues within 4Å:- Chain H: I.244, V.248
- Ligands: PLC.37, PLC.38
No protein-ligand interaction detected (PLIP)D10.52: 4 residues within 4Å:- Chain I: I.244, V.248
- Ligands: PLC.44, PLC.45
No protein-ligand interaction detected (PLIP)- 18 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
PLC.5: 20 residues within 4Å:- Chain A: T.80
- Chain B: L.197, W.200, F.204, W.205, F.206, M.207, P.214, G.218
- Chain F: L.59, T.62, V.63, I.66, V.67, M.199, T.204, F.219, M.223, I.227
- Ligands: PLC.20
Ligand excluded by PLIPPLC.7: 24 residues within 4Å:- Chain B: S.51, F.52, F.56, E.57, M.61, L.64, Y.65, I.68, V.69, T.138, D.139, F.140, Y.149, L.192, P.193, V.195, G.196
- Chain F: M.150, K.210, D.211, P.214, V.215, F.218
- Ligands: PLC.37
Ligand excluded by PLIPPLC.9: 18 residues within 4Å:- Chain B: I.28, V.31, F.32, W.35, W.38, Y.39, Y.43, Y.59, F.63, T.66, E.67, L.70, E.71, T.74, L.150, I.154, I.157
- Ligands: P1O.10
Ligand excluded by PLIPPLC.12: 14 residues within 4Å:- Chain A: Q.145
- Chain B: E.208, L.210, V.212, P.214, Y.217, V.220, W.224
- Chain C: T.44, V.63, V.67, M.199
- Ligands: D10.6, PLC.17
Ligand excluded by PLIPPLC.13: 20 residues within 4Å:- Chain A: I.244, V.248, M.251, N.255, T.261
- Chain C: R.57, V.147, M.150, G.151, L.154, Y.157, P.158, W.161, K.210, A.213, P.214, A.217, F.218
- Ligands: D10.3, PLC.18
Ligand excluded by PLIPPLC.17: 20 residues within 4Å:- Chain C: L.59, T.62, V.63, I.66, V.67, M.199, T.204, F.219, M.223, I.227
- Chain E: L.197, W.200, F.204, W.205, F.206, M.207, P.214, G.218
- Chain I: T.80
- Ligands: PLC.12
Ligand excluded by PLIPPLC.18: 13 residues within 4Å:- Chain C: K.210, P.214, F.218
- Chain E: I.68, E.71, I.72, F.140, Y.149, P.153, L.192
- Ligands: D10.3, PLC.13, PLC.32
Ligand excluded by PLIPPLC.20: 13 residues within 4Å:- Chain D: E.208, L.210, V.212, P.214, Y.217, V.220, W.224
- Chain F: T.44, V.67, M.199
- Chain H: Q.145
- Ligands: PLC.5, D10.23
Ligand excluded by PLIPPLC.22: 21 residues within 4Å:- Chain D: L.197, W.200, F.204, W.205, F.206, M.207, P.214, G.218
- Chain G: L.59, T.62, V.63, I.66, V.67, T.70, M.199, T.204, F.219, M.223, I.227
- Chain H: T.80
- Ligands: PLC.29
Ligand excluded by PLIPPLC.24: 24 residues within 4Å:- Chain D: S.51, F.52, F.56, E.57, M.61, L.64, Y.65, I.68, V.69, T.138, D.139, F.140, Y.149, L.192, P.193, V.195, G.196
- Chain G: M.150, K.210, D.211, P.214, V.215, F.218
- Ligands: PLC.44
Ligand excluded by PLIPPLC.26: 18 residues within 4Å:- Chain D: I.28, V.31, F.32, W.35, W.38, Y.39, Y.43, Y.59, F.63, T.66, E.67, L.70, E.71, T.74, L.150, I.154, I.157
- Ligands: P1O.27
Ligand excluded by PLIPPLC.29: 14 residues within 4Å:- Chain E: E.208, L.210, V.212, P.214, Y.217, V.220, W.224
- Chain G: T.44, V.63, V.67, M.199
- Chain I: Q.145
- Ligands: PLC.22, D10.31
Ligand excluded by PLIPPLC.32: 24 residues within 4Å:- Chain C: M.150, K.210, D.211, P.214, V.215, F.218
- Chain E: S.51, F.52, F.56, E.57, M.61, L.64, Y.65, I.68, V.69, T.138, D.139, F.140, Y.149, L.192, P.193, V.195, G.196
- Ligands: PLC.18
Ligand excluded by PLIPPLC.34: 18 residues within 4Å:- Chain E: I.28, V.31, F.32, W.35, W.38, Y.39, Y.43, Y.59, F.63, T.66, E.67, L.70, E.71, T.74, L.150, I.154, I.157
- Ligands: P1O.35
Ligand excluded by PLIPPLC.37: 13 residues within 4Å:- Chain B: I.68, E.71, I.72, F.140, Y.149, P.153, L.192
- Chain F: K.210, P.214, F.218
- Ligands: PLC.7, PLC.38, D10.49
Ligand excluded by PLIPPLC.38: 20 residues within 4Å:- Chain F: R.57, V.147, M.150, G.151, L.154, Y.157, P.158, W.161, K.210, A.213, P.214, A.217, F.218
- Chain H: I.244, V.248, M.251, N.255, T.261
- Ligands: PLC.37, D10.49
Ligand excluded by PLIPPLC.44: 13 residues within 4Å:- Chain D: I.68, E.71, I.72, F.140, Y.149, P.153, L.192
- Chain G: K.210, P.214, F.218
- Ligands: PLC.24, PLC.45, D10.52
Ligand excluded by PLIPPLC.45: 20 residues within 4Å:- Chain G: R.57, V.147, M.150, G.151, L.154, Y.157, P.158, W.161, K.210, A.213, P.214, A.217, F.218
- Chain I: I.244, V.248, M.251, N.255, T.261
- Ligands: PLC.44, D10.52
Ligand excluded by PLIP- 3 x HXG: 1,2-dihexanoyl-sn-glycero-3-phosphocholine(Non-covalent)
HXG.8: 9 residues within 4Å:- Chain B: L.34, R.37, W.38, W.114, Y.117, W.118, Y.122
- Chain C: I.102, F.106
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:W.118, B:Y.122, C:I.102, C:F.106
HXG.25: 9 residues within 4Å:- Chain D: L.34, R.37, W.38, W.114, Y.117, W.118, Y.122
- Chain F: I.102, F.106
4 PLIP interactions:2 interactions with chain F, 2 interactions with chain D- Hydrophobic interactions: F:I.102, F:F.106, D:W.118, D:Y.122
HXG.33: 9 residues within 4Å:- Chain E: L.34, R.37, W.38, W.114, Y.117, W.118, Y.122
- Chain G: I.102, F.106
4 PLIP interactions:2 interactions with chain E, 2 interactions with chain G- Hydrophobic interactions: E:W.118, E:Y.122, G:I.102, G:F.106
- 9 x P1O: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
P1O.10: 19 residues within 4Å:- Chain B: W.21, F.24, A.25, I.28, Y.29, T.74, L.78, T.85, R.101, T.104, V.107, W.108, A.111, I.154, I.157, T.158, Y.165, R.169
- Ligands: PLC.9
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:W.21, B:W.21, B:A.25, B:Y.29, B:T.74, B:L.78, B:W.108, B:I.157
P1O.11: 20 residues within 4Å:- Chain B: A.75, S.76, W.79, G.80, W.83, R.86, F.160, F.163, I.164, K.167, I.177, L.182, V.186, F.189
- Chain C: T.247
- Chain F: S.140, L.142, F.143, I.146, V.147
13 PLIP interactions:11 interactions with chain B, 2 interactions with chain F- Hydrophobic interactions: B:W.79, B:W.83, B:W.83, B:F.160, B:F.160, B:F.163, B:I.164, B:I.177, B:L.182, B:F.189, F:F.143, F:I.146
- Salt bridges: B:K.167
P1O.19: 21 residues within 4Å:- Chain B: L.179, L.182, V.183, V.186, M.190, L.225
- Chain C: W.237, R.242, F.243, L.244, Q.245, S.246, T.247
- Chain F: Y.141, L.142, F.229, H.232, F.233, R.236
- Ligands: D10.15, D10.39
15 PLIP interactions:6 interactions with chain F, 5 interactions with chain B, 4 interactions with chain C- Hydrophobic interactions: F:L.142, F:F.229, F:F.229, F:F.233, B:L.179, B:L.182, B:V.183, B:V.186, B:L.225, C:W.237, C:L.244
- Salt bridges: F:H.232, F:R.236, C:R.242
- Hydrogen bonds: C:Q.245
P1O.27: 19 residues within 4Å:- Chain D: W.21, F.24, A.25, I.28, Y.29, T.74, L.78, T.85, R.101, T.104, V.107, W.108, A.111, I.154, I.157, T.158, Y.165, R.169
- Ligands: PLC.26
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:W.21, D:W.21, D:A.25, D:Y.29, D:T.74, D:L.78, D:W.108, D:I.157
P1O.28: 20 residues within 4Å:- Chain D: A.75, S.76, W.79, G.80, W.83, R.86, F.160, F.163, I.164, K.167, I.177, L.182, V.186, F.189
- Chain F: T.247
- Chain G: S.140, L.142, F.143, I.146, V.147
13 PLIP interactions:11 interactions with chain D, 2 interactions with chain G- Hydrophobic interactions: D:W.79, D:W.83, D:W.83, D:F.160, D:F.160, D:F.163, D:I.164, D:I.177, D:L.182, D:F.189, G:F.143, G:I.146
- Salt bridges: D:K.167
P1O.35: 19 residues within 4Å:- Chain E: W.21, F.24, A.25, I.28, Y.29, T.74, L.78, T.85, R.101, T.104, V.107, W.108, A.111, I.154, I.157, T.158, Y.165, R.169
- Ligands: PLC.34
8 PLIP interactions:8 interactions with chain E- Hydrophobic interactions: E:W.21, E:W.21, E:A.25, E:Y.29, E:T.74, E:L.78, E:W.108, E:I.157
P1O.36: 19 residues within 4Å:- Chain C: S.140, L.142, F.143, I.146
- Chain E: A.75, S.76, W.79, G.80, W.83, R.86, F.160, F.163, I.164, K.167, I.177, L.182, V.186, F.189
- Chain G: T.247
13 PLIP interactions:11 interactions with chain E, 2 interactions with chain C- Hydrophobic interactions: E:W.79, E:W.83, E:W.83, E:F.160, E:F.160, E:F.163, E:I.164, E:I.177, E:L.182, E:F.189, C:F.143, C:I.146
- Salt bridges: E:K.167
P1O.42: 21 residues within 4Å:- Chain D: L.179, L.182, V.183, V.186, M.190, L.225
- Chain F: W.237, R.242, F.243, L.244, Q.245, S.246, T.247
- Chain G: Y.141, L.142, F.229, H.232, F.233, R.236
- Ligands: D10.40, D10.46
15 PLIP interactions:6 interactions with chain G, 4 interactions with chain F, 5 interactions with chain D- Hydrophobic interactions: G:L.142, G:F.229, G:F.229, G:F.233, F:W.237, F:L.244, D:L.179, D:L.182, D:V.183, D:V.186, D:L.225
- Salt bridges: G:H.232, G:R.236, F:R.242
- Hydrogen bonds: F:Q.245
P1O.43: 21 residues within 4Å:- Chain C: Y.141, L.142, F.229, H.232, F.233, R.236
- Chain E: L.179, L.182, V.183, V.186, M.190, L.225
- Chain G: W.237, R.242, F.243, L.244, Q.245, S.246, T.247
- Ligands: D10.14, D10.47
14 PLIP interactions:6 interactions with chain C, 4 interactions with chain G, 4 interactions with chain E- Hydrophobic interactions: C:L.142, C:F.229, C:F.229, C:F.233, G:W.237, G:L.244, E:L.179, E:L.182, E:V.183, E:V.186
- Salt bridges: C:H.232, C:R.236, G:R.242
- Hydrogen bonds: G:Q.245
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Koo, C.W. et al., Recovery of particulate methane monooxygenase structure and activity in a lipid bilayer. Science (2022)
- Release Date
- 2022-03-30
- Peptides
- Particulate methane monooxygenase alpha subunit: AHI
Ammonia monooxygenase/methane monooxygenase, subunit C family protein: BDE
Particulate methane monooxygenase beta subunit: CFG - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AH
EI
IB
CD
GE
KC
BF
FG
J - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-3-mer
- Ligands
- 9 x CU: COPPER (II) ION(Non-covalent)
- 15 x D10: DECANE(Non-functional Binders)(Non-covalent)
- 18 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
- 3 x HXG: 1,2-dihexanoyl-sn-glycero-3-phosphocholine(Non-covalent)
- 9 x P1O: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Koo, C.W. et al., Recovery of particulate methane monooxygenase structure and activity in a lipid bilayer. Science (2022)
- Release Date
- 2022-03-30
- Peptides
- Particulate methane monooxygenase alpha subunit: AHI
Ammonia monooxygenase/methane monooxygenase, subunit C family protein: BDE
Particulate methane monooxygenase beta subunit: CFG - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AH
EI
IB
CD
GE
KC
BF
FG
J - Membrane
-
We predict this structure to be a membrane protein.