SMTL ID : 7t4w.1 (1 other biounit)

Crystal Structure of cGMP-dependent Protein Kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

1 x EZJ: (2R)-2-({(2S,3S)-1-[(1H-benzimidazol-2-yl)methyl]-2-phenylpiperidin-3-yl}oxy)-2-(3,5-dichlorophenyl)ethan-1-ol(Non-covalent)

EZJ.1: 15 residues within 4Å: Chain A: F.20, L.23, L.31, F.56, W.87, E.90, L.93, I.114, F.119, Y.134, A.137, E.138, A.141, K.142, A.145 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.20, A:F.56, A:E.90, A:F.119, A:A.137, A:E.138, A:K.142, A:A.145

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: H.215, S.216, D.217, R.221 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Metwally, E. et al., Selective small molecule activation of PKG1alpha: structure and function. Commun Biol (2023)

Release Date

2023-06-14

Peptides

cGMP-dependent protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cGMP-dependent protein kinase 1

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