SMTL ID : 7tc3.1

Human APE1 in the apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: Y.13, W.235, R.242, N.245, S.270 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.13, A:R.242, A:S.270 Water bridges: A:Y.13 EDO.2: 5 residues within 4Å: Chain A: H.183, E.184, R.205, Q.206, G.209 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.184, A:G.209 EDO.3: 4 residues within 4Å: Chain A: N.142, A.198, F.234, W.248 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.142, A:N.142, A:W.248 Water bridges: A:G.144 EDO.4: 6 residues within 4Å: Chain A: A.28, T.29, L.30, K.31, D.58, Y.283 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.58 Water bridges: A:K.20, A:K.20 EDO.5: 4 residues within 4Å: Chain A: E.118, E.122, R.149, Y.152 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.122, A:R.149, A:R.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pidugu, L.S. et al., Characterizing inhibitors of human AP endonuclease 1. Plos One (2023)

Release Date

2022-12-21

Peptides

DNA-(apurinic or apyrimidinic site) endonuclease, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA-(apurinic or apyrimidinic site) endonuclease, mitochondrial

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