SMTL ID : 7td5.2 (1 other biounit)

Structure of human PRC2-EZH1 containing phosphorylated SUZ12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.299, C.302, C.307, H.310 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.299, A:C.302, A:C.307, A:H.310 ZN.2: 2 residues within 4Å: Chain A: C.454, C.465 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.454, A:C.465 ZN.3: 7 residues within 4Å: Chain A: C.524, C.531, C.544, C.550, C.554 Ligands: ZN.4, ZN.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.531, A:C.544, A:C.550, A:C.554 ZN.4: 6 residues within 4Å: Chain A: C.524, H.526, C.531, C.535 Ligands: ZN.3, ZN.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.524, A:H.526, A:C.531, A:C.535 ZN.5: 6 residues within 4Å: Chain A: C.524, C.537, C.544, C.548 Ligands: ZN.3, ZN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.524, A:C.537, A:C.544, A:C.548 ZN.6: 7 residues within 4Å: Chain A: C.561, C.567, C.581, C.589, C.602 Ligands: ZN.7, ZN.8 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.567, A:C.581, A:C.589, A:C.602 ZN.7: 6 residues within 4Å: Chain A: C.561, C.574, C.581, C.586 Ligands: ZN.6, ZN.8 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.561, A:C.574, A:C.581, A:C.586 ZN.8: 7 residues within 4Å: Chain A: C.561, C.563, C.567, C.572, C.581 Ligands: ZN.6, ZN.7 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.561, A:C.563, A:C.567, A:C.572

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.9: 19 residues within 4Å: Chain A: V.622, A.623, G.624, W.625, M.663, S.664, S.665, F.666, R.686, F.687, A.688, N.689, H.690, Y.727, Y.737, V.738, G.739, I.740 Chain D: M.6 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:W.625, A:M.663, A:S.665, A:S.665, A:N.689, A:N.689, A:H.690, A:I.740, A:I.740

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gong, L. et al., CK2-mediated phosphorylation of SUZ12 promotes PRC2 function by stabilizing enzyme active site. Nat Commun (2022)

Release Date

2022-11-16

Peptides

Histone-lysine N-methyltransferase EZH1: A
Polycomb protein EED: B
Polycomb protein SUZ12: C
THR-LYS-ALA-ALA-ARG-MET-SER-ALA-PRO-SER: D
THR-LYS-ALA-ALA-ARG-M3L-SER-ALA-PRO-ALA: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
H

D
I

E
J

Histone-lysine N-methyltransferase EZH1

Polycomb protein EED

Polycomb protein SUZ12

THR-LYS-ALA-ALA-ARG-MET-SER-ALA-PRO-SER

THR-LYS-ALA-ALA-ARG-M3L-SER-ALA-PRO-ALA

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