SMTL ID : 7thq.2 (1 other biounit)

Crystal structure of PltF trapped with PigG using a proline adenosine vinylsulfonamide inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

hetero-1-1-mer

Ligands

3 x AZI: AZIDE ION(Non-covalent)

AZI.1: 2 residues within 4Å: Chain A: E.187, C.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.187, A:E.187 AZI.2: 3 residues within 4Å: Chain A: E.353, M.382, L.394 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.394, A:R.396 AZI.4: 2 residues within 4Å: Chain B: E.30, L.31 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.30, B:E.30

1 x I5M: 5'-deoxy-5'-({(2S)-2-({2-[(N-{(2R)-4-[(dioxo-lambda~5~-phosphanyl)oxy]-2-hydroxy-3,3-dimethylbutanoyl}-beta-alanyl)amino]ethyl}sulfanyl)-2-[(2S)-pyrrolidin-2-yl]ethanesulfonyl}amino)adenosine(Covalent)

I5M.3: 30 residues within 4Å: Chain A: F.205, D.206, L.207, F.231, Y.249, V.251, V.254, M.257, A.278, G.279, E.280, P.281, N.301, L.302, F.303, G.304, P.305, T.306, N.309, V.310, D.381, Y.393, R.396, M.400, K.402, R.404, G.405, N.406, R.407 Chain B: S.36 22 PLIP interactions: 20 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.207, A:V.251, A:V.251, A:V.254, A:A.278, A:V.310 Hydrogen bonds: A:G.279, A:N.301, A:L.302, A:G.304, A:G.304, A:T.306, A:Y.393, A:Y.393, A:R.396, A:K.402, A:N.406, A:N.406, A:R.407, B:S.36, B:A.37 Salt bridges: A:R.404

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Corpuz, J.C. et al., Essential Role of Loop Dynamics in Type II NRPS Biomolecular Recognition. Acs Chem.Biol. (2022)

Release Date

2022-11-30

Peptides

L-proline--[L-prolyl-carrier protein] ligase: A
Probable acyl carrier protein PigG: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

L-proline--[L-prolyl-carrier protein] ligase

Probable acyl carrier protein PigG

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