SMTL ID : 7to8.1

BRD3-BD1 in complex with RaPID linear peptide 2xAcK.1 (diAcK.1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-2-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: I.57, I.58, K.59, N.60, N.92, I.95 Chain C: Y.94, P.99, V.104, Q.108 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:I.57, A:K.59, A:N.60, A:N.60, A:N.92, C:Q.108 GOL.2: 7 residues within 4Å: Chain A: K.56 Chain C: I.57, I.58, K.59, N.60, N.92, I.95 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:K.59, C:N.60, C:N.60, C:N.92, A:K.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Low, J.K.K. et al., mRNA display reveals a class of high-affinity bromodomain-binding motifs that are not found in the human proteome. J.Biol.Chem. (2023)

Release Date

2023-01-25

Peptides

Bromodomain-containing protein 3: AC
2xAcK.1 (diAcK.1): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
A

B
C

Bromodomain-containing protein 3

2xAcK.1 (diAcK.1)

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