SMTL ID : 7tp4.1

Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody K398.22

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 4 residues within 4Å: Chain A: G.7, F.10, N.11, L.36 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: V.171 Chain B: W.47, V.50 Chain C: Y.93, G.95, T.96, V.97 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.93, C:Y.93, C:V.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, W.T. et al., Broadly neutralizing antibodies to SARS-related viruses can be readily induced in rhesus macaques. Sci Transl Med (2022)

Release Date

2022-02-23

Peptides

Spike protein S1: A
K398.22 heavy chain: B
K398.22 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Z

B
H

C
L

Spike protein S1

K398.22 heavy chain

K398.22 light chain

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