SMTL ID : 8siq.1

Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with broadly neutralizing antibodies CC25.36 and CV38-142 Fab

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 11 residues within 4Å: Chain A: F.6, G.7, F.10, N.11, V.35, N.38 Chain D: R.100, Y.103 Chain E: S.31, Y.49, S.53 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D, 3 interactions with chain E Hydrogen bonds: A:N.38, D:R.100, E:Y.49, E:S.53, E:S.53 Hydrophobic interactions: D:Y.103, D:Y.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, G. et al., Broadly neutralizing antibodies targeting a conserved silent face of spike RBD resist extreme SARS-CoV-2 antigenic drift. Biorxiv (2023)

Release Date

2024-03-13

Peptides

Spike protein S1: A
CC25.36 Fab heavy chain: B
CC25.36 Fab light chain: C
CV38-142 Fab heavy chain: D
CV38-142 Fab light chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

D
M

E
N

Spike protein S1

CC25.36 Fab heavy chain

CC25.36 Fab light chain

CV38-142 Fab heavy chain

CV38-142 Fab light chain

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