- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 17 residues within 4Å:- Chain B: Y.47, G.48, P.49, D.99, G.100, T.101, N.102, F.103, T.166, M.169, S.170, G.411, G.412, I.482, I.497
- Ligands: MG.1, AF3.3
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:Y.47, B:G.48, B:G.100, B:T.101, B:N.102, B:F.103, B:S.170, B:G.412, B:D.499, B:D.499
- Salt bridges: B:K.171
ADP.5: 17 residues within 4Å:- Chain C: T.39, L.40, G.41, P.42, D.92, G.93, T.94, T.95, S.96, S.164, S.165, G.408, G.409, V.502, R.509
- Ligands: MG.4, AF3.6
12 PLIP interactions:12 interactions with chain C- Hydrogen bonds: C:G.41, C:D.92, C:G.93, C:T.94, C:T.95, C:S.96, C:S.96, C:S.164, C:S.165, C:G.409, C:R.509
- Salt bridges: C:K.166
ADP.8: 16 residues within 4Å:- Chain D: S.51, L.52, G.53, P.54, D.104, G.105, T.106, T.107, G.108, S.175, G.421, G.422, L.462, E.508
- Ligands: MG.7, AF3.9
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:S.51, D:G.53, D:G.105, D:T.106, D:T.107, D:G.108, D:S.175, D:G.422, D:E.508
ADP.11: 18 residues within 4Å:- Chain E: T.42, L.43, G.44, P.45, D.97, G.98, T.100, S.101, T.165, S.168, S.169, G.410, I.450, M.480, I.493, E.495
- Ligands: MG.10, AF3.12
12 PLIP interactions:12 interactions with chain E- Hydrogen bonds: E:G.44, E:G.98, E:T.99, E:T.100, E:T.100, E:S.168, E:S.169, E:S.169, E:G.410, E:E.495
- Salt bridges: E:K.170, E:K.170
ADP.14: 18 residues within 4Å:- Chain F: S.51, L.52, G.53, P.54, D.104, G.105, T.106, T.107, S.108, N.172, S.173, G.424, G.425, L.465, I.493, Q.510
- Ligands: MG.13, AF3.15
10 PLIP interactions:10 interactions with chain F- Hydrogen bonds: F:G.53, F:G.105, F:G.105, F:T.107, F:T.107, F:S.108, F:N.172, F:S.173, F:G.425, F:Q.510
ADP.17: 18 residues within 4Å:- Chain G: S.35, L.36, G.37, P.38, D.88, G.89, T.90, T.91, S.92, T.154, S.158, G.411, G.412, L.488, V.503, E.505
- Ligands: MG.16, AF3.18
9 PLIP interactions:9 interactions with chain G- Hydrogen bonds: G:G.37, G:G.89, G:T.90, G:T.91, G:T.91, G:S.92, G:S.158, G:G.412, G:E.505
ADP.20: 20 residues within 4Å:- Chain H: L.41, G.42, P.43, D.93, G.94, T.95, T.96, S.97, T.161, T.162, G.410, G.411, L.451, V.480, G.482, E.483, I.495, E.497
- Ligands: MG.19, AF3.21
11 PLIP interactions:11 interactions with chain H- Hydrogen bonds: H:C.40, H:G.42, H:D.93, H:G.94, H:T.95, H:T.96, H:T.96, H:S.97, H:G.411, H:G.482, H:E.483
ADP.23: 16 residues within 4Å:- Chain I: N.37, L.38, G.39, P.40, D.90, G.91, T.92, T.93, S.94, T.158, K.159, A.411, L.481, D.496
- Ligands: MG.22, AF3.24
11 PLIP interactions:11 interactions with chain I- Hydrogen bonds: I:N.37, I:G.39, I:G.91, I:T.92, I:T.93, I:T.158, I:A.411, I:D.496
- Salt bridges: I:K.58, I:K.159, I:K.159
- 8 x AF3: ALUMINUM FLUORIDE(Non-covalent)
AF3.3: 8 residues within 4Å:- Chain B: D.68, A.69, D.99, T.101, K.171, D.394
- Ligands: MG.1, ADP.2
No protein-ligand interaction detected (PLIP)AF3.6: 10 residues within 4Å:- Chain C: N.60, D.61, G.62, D.92, T.94, T.95, K.166, D.391
- Ligands: MG.4, ADP.5
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:D.61
AF3.9: 9 residues within 4Å:- Chain D: D.73, D.104, G.105, T.106, T.107, K.176, D.404
- Ligands: MG.7, ADP.8
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:D.73
AF3.12: 8 residues within 4Å:- Chain E: N.65, D.66, D.97, T.99, K.170, D.392
- Ligands: MG.10, ADP.11
No protein-ligand interaction detected (PLIP)AF3.15: 10 residues within 4Å:- Chain F: N.72, D.73, G.74, D.104, T.106, T.107, K.174, D.407
- Ligands: MG.13, ADP.14
No protein-ligand interaction detected (PLIP)AF3.18: 8 residues within 4Å:- Chain G: N.56, D.57, G.58, T.90, T.91, K.159, D.394
- Ligands: ADP.17
No protein-ligand interaction detected (PLIP)AF3.21: 9 residues within 4Å:- Chain H: D.62, G.63, D.93, T.95, T.96, K.163, D.393
- Ligands: MG.19, ADP.20
No protein-ligand interaction detected (PLIP)AF3.24: 9 residues within 4Å:- Chain I: D.59, G.60, D.90, T.92, T.93, K.159, D.393
- Ligands: MG.22, ADP.23
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gestaut, D. et al., Structural visualization of the tubulin folding pathway directed by human chaperonin TRiC/CCT. Cell (2022)
- Release Date
- 2022-12-28
- Peptides
- Tubulin beta chain: A
T-complex protein 1 subunit theta: B
T-complex protein 1 subunit eta: C
T-complex protein 1 subunit epsilon: D
T-complex protein 1 subunit beta: E
T-complex protein 1 subunit delta: F
T-complex protein 1 subunit alpha: G
T-complex protein 1 subunit gamma: H
T-complex protein 1 subunit zeta: I - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
I
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 8 x AF3: ALUMINUM FLUORIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gestaut, D. et al., Structural visualization of the tubulin folding pathway directed by human chaperonin TRiC/CCT. Cell (2022)
- Release Date
- 2022-12-28
- Peptides
- Tubulin beta chain: A
T-complex protein 1 subunit theta: B
T-complex protein 1 subunit eta: C
T-complex protein 1 subunit epsilon: D
T-complex protein 1 subunit beta: E
T-complex protein 1 subunit delta: F
T-complex protein 1 subunit alpha: G
T-complex protein 1 subunit gamma: H
T-complex protein 1 subunit zeta: I - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
I