SMTL ID : 7tuy.1

Cryo-EM structure of GSK682753A-bound EBI2/GPR183

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x KKF: 8-[(2E)-3-(4-chlorophenyl)prop-2-enoyl]-3-[(3,4-dichlorophenyl)methyl]-1-oxa-3,8-diazaspiro[4.5]decan-2-one(Non-covalent)

KKF.1: 14 residues within 4Å: Chain D: M.34, Y.38, R.87, Y.90, F.111, Y.112, L.166, Y.184, L.197, Y.368, I.372, H.399, V.402, N.406 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:Y.38, D:F.111, D:L.166, D:Y.184, D:I.372, D:I.372, D:V.402 pi-Stacking: D:Y.90 Halogen bonds: D:L.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, H. et al., Structures of oxysterol sensor EBI2/GPR183, a key regulator of the immune response. Structure (2022)

Release Date

2022-04-13

Peptides

anti-BRIL Fab Heavy chain: A
anti-Fab Nanobody: B
anti-BRIL Fab Light chain: C
G-protein coupled receptor 183,Soluble cytochrome b562 fusion: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
K

C
L

D
R

Membrane

We predict this structure to be a membrane protein.
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anti-BRIL Fab Heavy chain

anti-Fab Nanobody

anti-BRIL Fab Light chain

G-protein coupled receptor 183,Soluble cytochrome b562 fusion

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