SMTL ID : 7u16.1

TMEM106B(120-254) protofilament from frontotemporal lobar degeneration with TDP-43 pathology (FTLD-TDP) type A (all cases combined).

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.64 Ligands: NAG.5 No protein-ligand interaction detected (PLIP) NAG.2: 4 residues within 4Å: Chain A: N.32, T.34 Chain B: N.32 Ligands: NAG.6 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.32, B:N.32 NAG.3: 2 residues within 4Å: Chain A: N.26 Ligands: NAG.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.26 NAG.4: 3 residues within 4Å: Chain A: V.43, N.45 Ligands: NAG.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.43 Hydrogen bonds: A:N.45 NAG.5: 4 residues within 4Å: Chain A: N.64 Chain B: N.64 Ligands: NAG.1, NAG.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.64 NAG.6: 5 residues within 4Å: Chain B: N.32, T.34 Chain C: N.32 Ligands: NAG.2, NAG.10 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:N.32, B:N.32 NAG.7: 3 residues within 4Å: Chain B: N.26 Ligands: NAG.3, NAG.11 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.26 NAG.8: 5 residues within 4Å: Chain A: N.45 Chain B: V.43, N.45 Ligands: NAG.4, NAG.12 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.45, B:N.45 Hydrophobic interactions: B:V.43 NAG.9: 3 residues within 4Å: Chain B: N.64 Chain C: N.64 Ligands: NAG.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.64 NAG.10: 3 residues within 4Å: Chain C: N.32, T.34 Ligands: NAG.6 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.32 NAG.11: 2 residues within 4Å: Chain C: N.26 Ligands: NAG.7 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.26 NAG.12: 4 residues within 4Å: Chain B: N.45 Chain C: V.43, N.45 Ligands: NAG.8 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:V.43 Hydrogen bonds: C:N.45, B:N.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, A. et al., Homotypic fibrillization of TMEM106B across diverse neurodegenerative diseases. Cell (2022)

Release Date

2022-03-23

Peptides

Transmembrane protein 106B: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Transmembrane protein 106B

Related Entries With Identical Sequence