SMTL ID : 7u32.1

MVV cleaved synaptic complex (CSC) intasome at 3.4 A resolution

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-16-mer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.12, A:H.16, A:C.40, A:C.43 ZN.3: 4 residues within 4Å: Chain B: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.12, B:H.16, B:C.40, B:C.43 ZN.4: 4 residues within 4Å: Chain C: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.12, C:H.16, C:C.40, C:C.43 ZN.5: 4 residues within 4Å: Chain E: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.12, E:H.16, E:C.40, E:C.43 ZN.6: 4 residues within 4Å: Chain F: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.12, F:H.16, F:C.40, F:C.43 ZN.7: 4 residues within 4Å: Chain G: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.12, G:H.16, G:C.40, G:C.43 ZN.8: 4 residues within 4Å: Chain K: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:H.12, K:H.16, K:C.40, K:C.43 ZN.10: 4 residues within 4Å: Chain L: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:H.12, L:H.16, L:C.40, L:C.43 ZN.11: 4 residues within 4Å: Chain M: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:H.12, M:H.16, M:C.40, M:C.43 ZN.12: 4 residues within 4Å: Chain O: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:H.12, O:H.16, O:C.40, O:C.43 ZN.13: 4 residues within 4Å: Chain P: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain P Metal complexes: P:H.12, P:H.16, P:C.40, P:C.43 ZN.14: 4 residues within 4Å: Chain Q: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:H.12, Q:H.16, Q:C.40, Q:C.43

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: D.66, E.154 Chain T: A.27 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.66, A:E.154 CA.9: 3 residues within 4Å: Chain J: A.27 Chain K: D.66, E.154 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:D.66, K:E.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ballandras-Colas, A. et al., Multivalent interactions essential for lentiviral integrase function. Nat Commun (2022)

Release Date

2022-05-11

Peptides

Integrase: ABCDEFGHKLMNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

K
I

L
J

M
K

N
L

O
M

P
N

Q
O

R
P

Integrase

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