SMTL ID : 7z1z.1

MVV strand transfer complex (STC) intasome in complex with LEDGF/p75 at 3.5 A resolution

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-16-2-mer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.12, A:H.16, A:C.40, A:C.43 ZN.2: 4 residues within 4Å: Chain B: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.12, B:H.16, B:C.40, B:C.43 ZN.3: 4 residues within 4Å: Chain C: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.12, C:H.16, C:C.40, C:C.43 ZN.4: 4 residues within 4Å: Chain E: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.12, E:H.16, E:C.40, E:C.43 ZN.5: 4 residues within 4Å: Chain F: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.12, F:H.16, F:C.40, F:C.43 ZN.6: 4 residues within 4Å: Chain G: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.12, G:H.16, G:C.40, G:C.43 ZN.7: 4 residues within 4Å: Chain N: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:H.12, N:H.16, N:C.40, N:C.43 ZN.8: 4 residues within 4Å: Chain O: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:H.12, O:H.16, O:C.40, O:C.43 ZN.9: 4 residues within 4Å: Chain P: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain P Metal complexes: P:H.12, P:H.16, P:C.40, P:C.43 ZN.10: 4 residues within 4Å: Chain R: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:H.12, R:H.16, R:C.40, R:C.43 ZN.11: 4 residues within 4Å: Chain S: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain S Metal complexes: S:H.12, S:H.16, S:C.40, S:C.43 ZN.12: 4 residues within 4Å: Chain T: H.12, H.16, C.40, C.43 4 PLIP interactions: 4 interactions with chain T Metal complexes: T:H.12, T:H.16, T:C.40, T:C.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ballandras-Colas, A. et al., Multivalent interactions essential for lentiviral integrase function. Nat Commun (2022)

Release Date

2022-05-11

Peptides

Pol polyprotein: ABCDEFGHNOPQRSTU
PC4 and SFRS1-interacting protein: IJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

N
I

O
J

P
K

Q
L

R
M

S
N

T
O

U
P

I
R

J
Q

Pol polyprotein

PC4 and SFRS1-interacting protein

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