SMTL ID : 7u9y.1

WDR5 bound to 2-(3,5-dimethoxybenzyl)-7-((2-methyl-1H-imidazol-1-yl)methyl)-5-(1-methyl-3-(trifluoromethyl)-1H-pyrazol-4-yl)-3,4-dihydroisoquinolin-1(2H)-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.1: 10 residues within 4Å: Chain A: G.164, C.166, L.180, I.181, D.182, V.188, I.200, A.202, T.204, W.212 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.180, A:I.200, A:A.202, A:W.212, A:W.212, A:W.212 Hydrogen bonds: A:C.166, A:L.180 Water bridges: A:G.164, A:D.182, A:D.182 pi-Stacking: A:W.212

1 x M4U: (5P)-2-[(3,5-dimethoxyphenyl)methyl]-7-[(2-methyl-1H-imidazol-1-yl)methyl]-5-[1-methyl-3-(trifluoromethyl)-1H-pyrazol-4-yl]-3,4-dihydroisoquinolin-1(2H)-one(Non-covalent)

M4U.2: 19 residues within 4Å: Chain A: A.18, V.19, S.20, A.36, G.60, I.61, S.62, D.63, D.78, F.104, F.120, P.144, Y.162, Y.231, C.232, I.233, F.234, I.276, L.292 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.120, A:F.120, A:F.234, A:I.276, A:I.276 Hydrogen bonds: A:C.232 pi-Stacking: A:F.104, A:F.104, A:Y.162 Halogen bonds: A:V.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teuscher, K.B. et al., Discovery of Potent Orally Bioavailable WD Repeat Domain 5 (WDR5) Inhibitors Using a Pharmacophore-Based Optimization. J.Med.Chem. (2022)

Release Date

2022-04-27

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 5

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