SMTL ID : 7uac.1

Human pro-meprin alpha (zymogen state)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: I.108, F.112, G.125, Q.126, N.127 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain A: N.209, V.212 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain A: R.426, N.427, Q.430 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.3: 7 residues within 4Å: Chain A: T.338, G.339, P.341, D.371, H.373, N.401, T.403 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.371, A:D.371

2 x CA: CALCIUM ION(Non-covalent)

CA.5: 4 residues within 4Å: Chain A: G.269, D.272, T.274, D.275 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.269, A:D.272, A:D.272, A:T.274, A:D.275 CA.7: 6 residues within 4Å: Chain A: T.257, E.259, D.288, T.290, Y.300, D.409 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:T.257, A:E.259, A:T.290, A:Y.300, A:D.409

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain A: D.45, H.142, H.146, H.152 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.45, A:D.45, A:H.142, A:H.146, A:H.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bayly-Jones, C. et al., Helical ultrastructure of the metalloprotease meprin alpha in complex with a small molecule inhibitor. Nat Commun (2022)

Release Date

2022-11-02

Peptides

Meprin A subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

Meprin A subunit alpha

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