SMTL ID : 7uae.1

Human meprin alpha (active state)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: Q.110, F.112, G.125, Q.126, N.127 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 3 residues within 4Å: Chain A: M.243, Y.244, N.245 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 3 residues within 4Å: Chain A: N.209, S.211, V.212 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain A: R.426, N.427, Q.430 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.5: 7 residues within 4Å: Chain A: T.338, G.339, D.371, H.373, D.398, N.401, T.403 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.371, A:D.371, A:D.371, A:H.373 Hydrophobic interactions: A:T.403

2 x CA: CALCIUM ION(Non-covalent)

CA.6: 4 residues within 4Å: Chain A: G.269, D.272, T.274, D.275 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.269, A:D.272, A:D.272, A:T.274, A:D.275 CA.8: 6 residues within 4Å: Chain A: T.257, E.259, D.288, T.290, Y.300, D.409 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:T.257, A:E.259, A:D.288, A:T.290, A:Y.300

1 x ZN: ZINC ION(Non-covalent)

ZN.7: 3 residues within 4Å: Chain A: H.142, H.146, H.152 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.142, A:H.146, A:H.152

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.9: 1 residues within 4Å: Chain A: N.526 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.526

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bayly-Jones, C. et al., Helical ultrastructure of the metalloprotease meprin alpha in complex with a small molecule inhibitor. Nat Commun (2022)

Release Date

2022-11-02

Peptides

Meprin A subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Meprin A subunit alpha

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