SMTL ID : 7ubz.2 (1 other biounit)

Chymotrypsin digested toxin/immunity complex for a T6SS lipase effector from E. cloacae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 5 residues within 4Å: Chain A: Y.207, K.208, N.211, E.212, D.215 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.208 Water bridges: A:D.215 Salt bridges: A:K.214

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: N.57, D.97 Chain B: Q.150, G.151, G.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.57, A:D.97 Water bridges: A:N.57 GOL.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.5: 4 residues within 4Å: Chain B: Q.19, K.22, D.23, A.26 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.19, B:D.23, B:D.23 Water bridges: B:N.30, B:N.30

1 x MIE: methylglyoxal(Covalent)

MIE.3: 5 residues within 4Å: Chain B: R.21, E.299, K.302, D.303, I.306 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.302, B:I.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jensen, S.J. et al., Advanced glycation end-product crosslinking activates a type VI secretion system phospholipase effector protein. Nat Commun (2024)

Release Date

2022-08-24

Peptides

Ankyrin repeat domain-containing protein: A
T6SS lipase effector: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Ankyrin repeat domain-containing protein

T6SS lipase effector

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