SMTL ID : 9cys.1

Toxin/immunity complex for a T6SS lipase effector from E. cloacae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 5 residues within 4Å: Chain B: R.131, Q.132, L.286, H.289 Ligands: GOL.2 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.286 Hydrogen bonds: B:Q.132

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain B: R.131 Ligands: CIT.1, PGE.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.131 GOL.4: 7 residues within 4Å: Chain B: K.14, R.17, W.18, R.21, N.47, K.302 Ligands: MIE.5 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.14, B:W.18, B:R.21 Water bridges: B:K.14, B:R.21, B:E.51

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 6 residues within 4Å: Chain B: Y.60, D.104, R.128, G.129, R.131 Ligands: GOL.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.129

1 x MIE: methylglyoxal(Covalent)

MIE.5: 6 residues within 4Å: Chain B: R.21, E.299, K.302, D.303, I.306 Ligands: GOL.4 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.302, B:I.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jensen, S.J. et al., Advanced glycation end-product crosslinking activates a type VI secretion system phospholipase effector protein. Nat Commun (2024)

Release Date

2024-08-14

Peptides

Ankyrin repeat domain-containing protein: A
T6SS lipase effector: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
A

Ankyrin repeat domain-containing protein

T6SS lipase effector

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