SMTL ID : 7ued.1

Crystal structure of full length mesothelin bound with MORAb-009 Fab

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: Q.68, G.69, Y.70, P.71, K.92, W.93, N.94 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain B: T.163, E.164, Q.165, D.166, S.167 Chain C: V.169, H.170, T.171 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:H.170, B:D.166, B:D.166, B:S.167

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 8 residues within 4Å: Chain C: H.41, S.91, A.92, V.93, P.114, V.115, T.116, E.154 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:V.115, C:T.116, C:T.116 SO4.4: 11 residues within 4Å: Chain B: Q.159, S.161, S.175, T.177 Chain C: F.172, P.173, A.174, V.175, S.183, L.184, S.185 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:V.175, C:S.183, C:S.185, B:S.175, B:T.177, B:T.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhan, J. et al., Structures of Cancer Antigen Mesothelin and Its Complexes with Therapeutic Antibodies. Cancer Res Commun (2023)

Release Date

2023-02-01

Peptides

Isoform 4 of Mesothelin: A
MORAb-009 Fab light chain: B
MORAb-009 Fab heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
L

C
H

Isoform 4 of Mesothelin

MORAb-009 Fab light chain

MORAb-009 Fab heavy chain

Related Entries With Identical Sequence